Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b09
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1112 + 30984925-30985101,30985204-30985851                       29   3.8  
06_01_0664 + 4850445-4850879,4853155-4854186                           28   6.6  
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    27   8.7  
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658...    27   8.7  

>04_04_1112 + 30984925-30985101,30985204-30985851
          Length = 274

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 282 SYYIKPKPRLLIGSWKKMCVQLWRRPTWSHN 374
           SY++ P+PRL   SW ++ +Q   R + +++
Sbjct: 32  SYFLPPRPRLAAASWSRLRLQTAPRSSQAYD 62


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 277 WEFINLDGGFVIIMLISTKHLISEGPRARLLV*NC*VLKN-RFCEEFHILLTCEGLKL 107
           W  IN+DG F +        ++      ++L+ +   ++  R  EE  ++  CEGLKL
Sbjct: 389 WAKINVDGAFTVEDGRCGLGIVIRNSEGKVLLSSWRFIRQCRTAEEAEVMACCEGLKL 446


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 585 FQKKHWFRLIVFGSCMSYYDIFMGKIKYLFKI 490
           F+K H  R++V   CMS     +  + YLF++
Sbjct: 563 FKKCHALRVLVLDGCMSLESQHINSLTYLFQL 594


>11_01_0787 +
           6578158-6579287,6579439-6580870,6581087-6581097,
           6581525-6582125,6583981-6585054,6585745-6585873,
           6585925-6585963
          Length = 1471

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 340 CNCGGDPLGLIISICSN-TEFQILKMMPLRAAVISGTSVNYVST 468
           CN G DPLG++ S  SN T  ++  M   +  V+   +  ++ T
Sbjct: 735 CNLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKT 778


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,186
Number of Sequences: 37544
Number of extensions: 279302
Number of successful extensions: 519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)