Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b08
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 27 1.8
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 27 2.4
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 27 2.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 3.2
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 5.6
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 7.4
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 7.4
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 7.4
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.4
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 7.4
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 25 9.7
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 357 IPNSKYQLANKAS--SYGANNGIKSITIAQ*VLD*PFVGNIN 238
IP Y + N+A SYG N+GIKS + + L V +N
Sbjct: 206 IPYCDYVIGNEAEILSYGENHGIKSTDVQEIALALSSVEKVN 247
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 278 RNKF*INLLWAILI*DYVLATPSAQSRIIYE 186
R F IN+LW IL+ VL P + +IY+
Sbjct: 179 RTSFGINMLWGILLMVGVLFLPESPRYLIYK 209
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 361 AALRIVFISGSVGI*PRITLIHKLIASVTYIVSTFNLLAD 480
A + +VF+ SV P +HKL V+ VS + ++AD
Sbjct: 220 AGITVVFVRDSVLARPTPAELHKLNIPVSPTVSDYKIMAD 259
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 301 IIGAI*GCFVC*LVLAIRNIAALRIVFISGSVGI*PRITLIHKLIASVTYIVSTFNLLAD 480
I G + C V V+++ A+ I ++SG + + + +IH+ + +I+S N+L D
Sbjct: 447 ITGFLQNCLVIAFVVSVFLTTAVGIPYMSGRLMVEWILFIIHRPTFILRFILSFVNILFD 506
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +1
Query: 421 IHKLIASVTYIVSTFNLLADINYYRYYWDH-PWRYQKSVPTLCL 549
+H L AS+ S + D YY W H P Q CL
Sbjct: 311 VHSLAASLFLNKSQIHYFEDFGYYHLPWYHCPTDVQSHATARCL 354
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 278 RNKF*INLLWAILI*DYVLATPSAQSRIIYE 186
R F IN+LW I + VL P + +IY+
Sbjct: 179 RTSFGINILWGIFLMVGVLFLPESPRYLIYK 209
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 430 LIASVTYIVSTFNLLADINYYRY 498
L+ S YIVS LL I YYR+
Sbjct: 78 LVLSFYYIVSDSTLLMQIYYYRW 100
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 43 CALIYIYCHNQFEHRFQRCLSDW 111
C L YI H+ + H +CL D+
Sbjct: 367 CPLFYIPYHDSYIHNVVQCLDDF 389
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 306 WRHMRML-CLLTGTCYSEYCSS 368
W H M+ +L TCY+ YCSS
Sbjct: 192 WIHTVMIYIILIVTCYTVYCSS 213
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 595 IVRLTLDLLRSFVMNLDTKLEQISDIAK 512
I LT + + ++NLDT +++SDI K
Sbjct: 28 ICNLTKETVAIKILNLDTDEDEVSDIQK 55
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = +1
Query: 460 TFNLLADINYYRYYWDH---PWR 519
T N L + NY+R +WD PW+
Sbjct: 269 TLNSLMEQNYHRDHWDQLLKPWK 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,451
Number of Sequences: 5004
Number of extensions: 48252
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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