Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b08
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0330 - 16816497-16819952                                         28   5.8  
10_08_0332 - 16843295-16843356,16843884-16846656                       28   7.6  

>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = -1

Query: 249 GNINLRLRAGNPIGAITYYLRTIPNTISYTKINTSFVYLNEKRNLNPI**TSLKSMF 79
           G + LRL   N +GAI + L  +PN + +  +  +++  ++ R  +P+   +  S++
Sbjct: 140 GLVELRLYNNNLVGAIPHQLSRLPNIVHF-DLGANYLTDHDFRKFSPMPTVTFMSLY 195


>10_08_0332 - 16843295-16843356,16843884-16846656
          Length = 944

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/74 (35%), Positives = 35/74 (47%)
 Frame = -1

Query: 384 NKNNSQSCNIPNSKYQLANKASSYGANNGIKSITIAQ*VLD*PFVGNINLRLRAGNPIGA 205
           N NN     IP S  +L +  S    NNG  S +I     D    G ++LRL   N +GA
Sbjct: 106 NGNNFTGA-IPASITRLRSLTSLDLGNNGF-SDSIPPQFGD--LSGLVDLRLYNNNLVGA 161

Query: 204 ITYYLRTIPNTISY 163
           I + L  +PN I +
Sbjct: 162 IPHQLSRLPNIIHF 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,372,882
Number of Sequences: 37544
Number of extensions: 253862
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)