Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b08
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83218-1|CAB05686.1|  282|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF040647-9|AAB94989.1|  336|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 13  IVSLLRSRYLCALIYIYCHNQFEHRFQRCLSDWVKISFFI*VDKTCIYF-CIRYRIWY 183
           +V +L S  L ALIY   HN   H  +R  S   +  FF+       +F C+ YR+ Y
Sbjct: 179 VVMILTSFSLSALIYCIAHN-LTHMEERQRSKLFRRLFFLFSSTLWTFFTCLPYRLLY 235


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 13  IVSLLRSRYLCALIYIYCHNQFEHRFQRCLSDWVKISFFI*VDKTCIYF-CIRYRIWY 183
           +V +L S  L ALIY   HN   H  +R  S   +  FF+       +F C+ YR+ Y
Sbjct: 179 VVMILTSFSLSALIYCIAHN-LTHMEERQRSKLFRRLFFLFSSTLWTFFTCLPYRLLY 235


>Z83218-1|CAB05686.1|  282|Caenorhabditis elegans Hypothetical
           protein C31A11.4 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 54  LYLLS*PI*TSISEMFIRLG*DFFFHLSR--QNLYLFLYKIS 173
           LYL   P+ +S+S ++ +LG D F+ LS     LY  L KIS
Sbjct: 30  LYLKRIPVKSSMSLIYYKLGIDAFYTLSLFFNKLYSILMKIS 71


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 468 FIGGHKLLQI--LLGSPLAISEICSNFVSKFITNDLSKSNVSLTISR 602
           F GG+ LL    + GSP  +  +  N       NDL KS V+L I R
Sbjct: 520 FSGGNTLLHFAAMTGSPCQVDVLLRNGAPLNELNDLHKSPVALAIRR 566


>AF040647-9|AAB94989.1|  336|Caenorhabditis elegans Hypothetical
           protein F54D12.8 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 306 WRHMRMLCLLTGTCYSEYCSSENCFYFGI 392
           WR     CL + TC   Y S+E C  + +
Sbjct: 46  WRDCAQKCLESSTCILAYSSTEVCVLYAV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,336,587
Number of Sequences: 27780
Number of extensions: 258045
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)