Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b07
(689 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41677 Cluster: Late expression factor 7; n=5; Nucleopo... 376 e-103
UniRef50_Q91GE5 Cluster: LEF-7; n=1; Epiphyas postvittana NPV|Re... 155 1e-36
UniRef50_Q2NNV8 Cluster: LEF7; n=1; Hyphantria cunea nucleopolyh... 69 1e-10
UniRef50_O10362 Cluster: Late expression factor 7; n=5; Nucleopo... 63 5e-09
UniRef50_Q8QLL8 Cluster: LEF-7; n=2; Mamestra configurata NPV-A|... 39 0.13
UniRef50_Q7RM66 Cluster: Chloroquine resistance marker protein; ... 35 2.2
UniRef50_A0C0W2 Cluster: Chromosome undetermined scaffold_140, w... 35 2.2
UniRef50_A6ENY0 Cluster: Putative ATPase/GTPase; n=1; unidentifi... 33 8.7
UniRef50_A1GCD1 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
UniRef50_A6SJW8 Cluster: Predicted protein; n=1; Botryotinia fuc... 33 8.7
>UniRef50_P41677 Cluster: Late expression factor 7; n=5;
Nucleopolyhedrovirus|Rep: Late expression factor 7 -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 226
Score = 376 bits (924), Expect = e-103
Identities = 181/218 (83%), Positives = 190/218 (87%), Gaps = 13/218 (5%)
Frame = -3
Query: 621 MSSVTKRARAKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 442
MSSVTKR RAKRIRLPLEIIDTILQYLDPI HAKVVGLTTRVKCRLLRDNNVEDYLKLTP
Sbjct: 1 MSSVTKRPRAKRIRLPLEIIDTILQYLDPILHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 60
Query: 441 ANYHFTTDQFICNYLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSL 262
A+YH TTDQFICNYLGIT+ PM PYLVPLLSFGKASC FFNKCIPEDVRIVTLN PL L
Sbjct: 61 ASYHPTTDQFICNYLGITNQPMAPYLVPLLSFGKASCVFFNKCIPEDVRIVTLNWPLPLL 120
Query: 261 ENFLSKQFLWYKLARKLIEHERQMDRCVTPSTVQINLYDDNEDYLNC------------- 121
ENFLSKQFLWYKLARKLIEHER+MDRCVTPSTVQINLYDDNEDYLNC
Sbjct: 121 ENFLSKQFLWYKLARKLIEHERRMDRCVTPSTVQINLYDDNEDYLNCFNCFNCCKDNLVS 180
Query: 120 FDCCIVDCNINDMNRCPDLQIDVYLXRQHNNFVFIFVY 7
F+CCIVDCNINDMNRCPDLQIDVYL +N + +++Y
Sbjct: 181 FNCCIVDCNINDMNRCPDLQIDVYL---DDNIISLYLY 215
>UniRef50_Q91GE5 Cluster: LEF-7; n=1; Epiphyas postvittana NPV|Rep:
LEF-7 - Epiphyas postvittana nucleopolyhedrovirus
(EppoMNPV)
Length = 194
Score = 155 bits (375), Expect = 1e-36
Identities = 83/180 (46%), Positives = 116/180 (64%), Gaps = 1/180 (0%)
Frame = -3
Query: 582 RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQFICN 403
RLP EI + ILQYL + HAKV+GLT R + RLL N + DYL LTP NYH D+ +
Sbjct: 3 RLPPEIAEEILQYLPAVVHAKVLGLTPRSRKRLLHKNKLMDYLALTPVNYHLPDDKHL-- 60
Query: 402 YLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKL 223
L ++P+TPY+ LL K SC FFNKCIP+ VR+ LN P + FL F W+ L
Sbjct: 61 -LAHFENPLTPYMA-LLCLEK-SCEFFNKCIPKHVRVAALNWPSPNNLKFLCSHFEWFAL 117
Query: 222 ARKLIEHERQMDRCVTPSTVQI-NLYDDNEDYLNCFDCCIVDCNINDMNRCPDLQIDVYL 46
+KL++HE + R ++P+TV++ ++ NE LN I+D N++D++RCP ++IDVYL
Sbjct: 118 IQKLLKHEHEQGRVISPNTVRVSDVKHVNE--LNSLS-NIIDINVDDVHRCPYVEIDVYL 174
>UniRef50_Q2NNV8 Cluster: LEF7; n=1; Hyphantria cunea
nucleopolyhedrovirus|Rep: LEF7 - Hyphantria cunea
nuclear polyhedrosis virus (HcNPV)
Length = 216
Score = 68.9 bits (161), Expect = 1e-10
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Frame = -3
Query: 582 RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQFICN 403
+LPL ++ IL YL H V G + R L+ + D L L + T D+F +
Sbjct: 20 QLPLVALNKILSYLPFELHMAVAGANASTRRRALQLPH--DRLALYFKHDIGTNDEFAAH 77
Query: 402 YLGITDHPMTPYLVPLLSFGKASCA--FFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWY 229
+ D P Y+ L F A A FFNKC+P LN P + + LS ++ W+
Sbjct: 78 WAIEVDDPAIAYVSQLCRFSCAIKAQKFFNKCVPNATARCMLNEPRAASDTMLSLRWGWW 137
Query: 228 KLARKLIEHERQMDRCVTPSTVQINLYDDNEDYLNCFDCCIVD 100
+L R LI+HE + R P V++ Y D + FD +++
Sbjct: 138 RLVRALIQHECKNGRSRRPERVRV--YGDEICDVTIFDASLLE 178
>UniRef50_O10362 Cluster: Late expression factor 7; n=5;
Nucleopolyhedrovirus|Rep: Late expression factor 7 -
Orgyia pseudotsugata multicapsid polyhedrosis virus
(OpMNPV)
Length = 211
Score = 63.3 bits (147), Expect = 5e-09
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Frame = -3
Query: 603 RARAKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPAN-YHF 427
+A K +LP E+ID IL +L H VVG + + R LR + +LT + Y
Sbjct: 13 QALPKLPQLPFEMIDKILSHLPFDLHVDVVGASAATRLRALRRPD-----RLTRYHEYDL 67
Query: 426 TTDQFICNYLGI-TDHPMTPYLVPLLSFGKASCA--FFNKCIPEDVRIVTLNRPLTSLEN 256
D+ + I P PY+ L AS A FFN+ +P + LN P ++
Sbjct: 68 AADELFAAHWNIEAADPARPYVGQLCRSTCASAAQKFFNERVPRAAAMCMLNAPRAESDS 127
Query: 255 FLSKQFLWYKLARKLIEHERQMDRCVTPSTVQINLYDDNEDYLNCFDCCIVDCNINDMNR 76
L++++ W+ L R L+ HE R P+ V++ D ++ + D ++ + N
Sbjct: 128 VLTRRWNWWGLTRTLLIHEANSGRGRRPARVRV----DADEACIGYHAPFCDASVFEFNA 183
Query: 75 CPDLQIDVYL 46
PD + V L
Sbjct: 184 QPDHVVFVLL 193
>UniRef50_Q8QLL8 Cluster: LEF-7; n=2; Mamestra configurata
NPV-A|Rep: LEF-7 - Mamestra configurata NPV-A
Length = 172
Score = 38.7 bits (86), Expect = 0.13
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -3
Query: 606 KRARAKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHF 427
+ AR LP E+ IL++L + V G R +L+ N + Y + PANY+
Sbjct: 8 RSARVTAAALPYEMKLKILEHLGIRTFLAVTGDKKRADTLMLKRNRYKLYFETRPANYNI 67
Query: 426 TTDQFICNYLG--ITDHPMTPYLV 361
D+ + +LG ++D P LV
Sbjct: 68 EKDEKLARHLGLNVSDIVRLPLLV 91
>UniRef50_Q7RM66 Cluster: Chloroquine resistance marker protein;
n=5; Plasmodium (Vinckeia)|Rep: Chloroquine resistance
marker protein - Plasmodium yoelii yoelii
Length = 1255
Score = 34.7 bits (76), Expect = 2.2
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = -3
Query: 216 KLIEHERQMDRCVTPSTVQINLYDDNEDYLNCFDCCIVDCNIND--MNRCPDLQ----ID 55
++IE+E + D + V DDN++Y+ FD C+ CN D +N+C ++ D
Sbjct: 619 EIIENEERKDNEREETIVSGPKIDDNKNYVYNFDGCVEKCNGEDGNINKCEKVEKTENCD 678
Query: 54 VYLXRQHNNFV-FIFVY-NY 1
+ + ++++ FI Y NY
Sbjct: 679 ISMDNNKDDYMHFIMFYENY 698
>UniRef50_A0C0W2 Cluster: Chromosome undetermined scaffold_140,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_140,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 658
Score = 34.7 bits (76), Expect = 2.2
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = -3
Query: 645 HLCAVVIRMSSVTKRARAKRIRLPLEIIDTILQY--LDPISHAKVVGLTTRVKCRLLRDN 472
+LC IR S + R +I LP + + + Q D + + L ++ + L D
Sbjct: 430 NLCKEKIRQSQTSNNQRQSKILLPQDHFEELFQIDSKDNQTTRNIKLLRQELQTKFLEDI 489
Query: 471 NVEDYLKLTPANYHFTTDQFICNYLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRI 292
+EDY F F+ Y + + L+S F++ I RI
Sbjct: 490 QLEDYYF---QQITFFKLNFVQQYPKNQQSQIAEQIQELISIWNKGHLSFSERIDYIKRI 546
Query: 291 VTLNRPLTSLENFLSKQFLWYKLARKLIEHERQ 193
+ + LE+ L + ++Y+ LIE +Q
Sbjct: 547 INSSNSTEELESILEECLIYYQQNELLIEKLQQ 579
>UniRef50_A6ENY0 Cluster: Putative ATPase/GTPase; n=1; unidentified
eubacterium SCB49|Rep: Putative ATPase/GTPase -
unidentified eubacterium SCB49
Length = 142
Score = 32.7 bits (71), Expect = 8.7
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Frame = -3
Query: 270 TSLENFLSKQFLWY--------KLARKLIEHERQMDRCVTPSTVQINLYDDNEDYLNCFD 115
T L+N SK FL+Y L ++L + +D +P+ +N Y +D + FD
Sbjct: 17 TILKNASSKNFLFYGDMGIGKTTLIKQLAIELKVIDNISSPTFSIVNEYQAGDDKIYHFD 76
Query: 114 CCIVDCNINDMNRCPDLQIDVYLXRQHNNFV 22
IND D+ +D Y H NF+
Sbjct: 77 FY----RINDETEALDIGVDEYFYSGHWNFI 103
>UniRef50_A1GCD1 Cluster: Putative uncharacterized protein; n=1;
Salinispora arenicola CNS205|Rep: Putative
uncharacterized protein - Salinispora arenicola CNS205
Length = 3677
Score = 32.7 bits (71), Expect = 8.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 555 ILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPAN 436
+++ L+PI H+ +G+ + L R N+ +D +L PAN
Sbjct: 1896 LIKELEPIKHSSALGIAINTQAVLRRRNHDQDAQRLAPAN 1935
>UniRef50_A6SJW8 Cluster: Predicted protein; n=1; Botryotinia
fuckeliana B05.10|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 601
Score = 32.7 bits (71), Expect = 8.7
Identities = 32/134 (23%), Positives = 58/134 (43%)
Frame = -3
Query: 537 PISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQFICNYLGITDHPMTPYLVP 358
P ++ +++G T K RD+ + + + FTT + +YL P+ L+P
Sbjct: 400 PFNYTELLGETQDGKSLYPRDDTQDPEYQPLYITF-FTTSSLLTSYLKNARSPLPAQLLP 458
Query: 357 LLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEHERQMDRCV 178
+L + S + FN I E + T++ P N +Q+L L+ + I
Sbjct: 459 ILDPKQPSTSPFNSLI-ELSLLRTIHHP-PQAPNPTPQQYLHRLLSSQPITPTSFTSILH 516
Query: 177 TPSTVQINLYDDNE 136
P+T QI ++ E
Sbjct: 517 LPNTTQIETWNQQE 530
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,474,748
Number of Sequences: 1657284
Number of extensions: 11852371
Number of successful extensions: 28957
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28935
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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