Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b05
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   257   9e-70
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   256   2e-69
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    30   0.26 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.45 
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   3.2  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  257 bits (630), Expect = 9e-70
 Identities = 130/217 (59%), Positives = 161/217 (74%), Gaps = 1/217 (0%)
 Frame = -2

Query: 661 IFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR 482
           +F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYR
Sbjct: 26  VFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYR 85

Query: 481 PRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLF 302
           PRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+ F
Sbjct: 86  PRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFF 145

Query: 301 NLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 125
           NLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ              
Sbjct: 146 NLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAE 202

Query: 124 XXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMR 14
             +   AE+A+L+A+R  E+K +++E +K RR++SM+
Sbjct: 203 KNREEAAEFAQLMAKRVAEAK-QKKEVVKARRASSMK 238


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  256 bits (627), Expect = 2e-69
 Identities = 129/217 (59%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
 Frame = -2

Query: 661 IFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR 482
           +F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYR
Sbjct: 26  VFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYR 85

Query: 481 PRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLF 302
           PRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+ F
Sbjct: 86  PRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFF 145

Query: 301 NLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXX 125
           NLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ              
Sbjct: 146 NLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAE 202

Query: 124 XXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMR 14
             +   AE+A+L+A+R  E+K +R E +K RR++S++
Sbjct: 203 KNREEAAEFAQLMAKRVAEAKQKR-EVVKARRASSLK 238


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = -2

Query: 298 LSKEDDVRRYVVKRVLPAKEGKEN-AKPRHKAPKIQRLVT-PVVLQXXXXXXXXXXXXXX 125
           L+KE ++R+ +  ++  ++  K    K R + PK +R +T  VV                
Sbjct: 512 LAKEIEMRKSLELKLKLSQSNKAGPVKHRKRRPKSKRRITGKVVFDSPNVASGVESDEGS 571

Query: 124 XXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMRDSK 5
              S ++EY+ +L+      K ++    +RR S+SM+ +K
Sbjct: 572 EEISLDSEYSDILSDDGDFEKEKQATLPRRRSSSSMKGNK 611


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 109 EAEYAKLLAQRKKESKVRRQEEIKRRRSASMRDSK 5
           E E  ++L +RK+  K+ ++EE +RRR    ++S+
Sbjct: 695 EEEEKRILEERKRREKLDKEEEERRRRELLEKESE 729



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 112 SEAEYAKLLAQRKKESKVRRQEEIKR-RRSASMRDSK 5
           ++   AKLL + ++E+K +++ E+K+ R     RD K
Sbjct: 565 AQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKK 601


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +2

Query: 170 QNYRGD*PLDLRCLMSGF----SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT 337
           +N   D P  L C+ +      S+ FS  G   A       +I + K E +   GSTFG 
Sbjct: 57  ENENEDLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG- 115

Query: 338 *TAGYISISQSRNFLGTLAHNNKSQD 415
             +G       R++   L H+N  QD
Sbjct: 116 --SGEKHTENWRSYRRLLGHDNDIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,216
Number of Sequences: 5004
Number of extensions: 52664
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)