Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b05
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 238 2e-63
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 237 6e-63
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.5
02_01_0295 - 1973115-1973404,1974138-1974663 29 2.5
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 3.3
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 29 4.4
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 28 5.8
02_05_0956 - 33064104-33066425 28 5.8
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 28 7.6
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 238 bits (583), Expect = 2e-63
Identities = 125/215 (58%), Positives = 151/215 (70%), Gaps = 4/215 (1%)
Frame = -2
Query: 658 FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP 479
FY+KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G C+R
Sbjct: 27 FYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRG 86
Query: 478 --RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKL 305
RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKL
Sbjct: 87 YGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKL 146
Query: 304 FNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXX 131
FNL+K+DDVR+YV +R K GK+ + KAPKIQRLVTP+ LQ
Sbjct: 147 FNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIAQKKQR 202
Query: 130 XXXXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRS 26
KS AEY KLLAQR KE + RR E + +RRS
Sbjct: 203 IAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRS 237
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 237 bits (580), Expect = 6e-63
Identities = 125/215 (58%), Positives = 150/215 (69%), Gaps = 4/215 (1%)
Frame = -2
Query: 658 FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP 479
F++KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT RVRLL+ +G C+R
Sbjct: 27 FFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRG 86
Query: 478 --RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKL 305
RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKL
Sbjct: 87 YGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKL 146
Query: 304 FNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXX 131
FNLSK+DDVR+YV +R K GK+ + KAPKIQRLVTP+ LQ
Sbjct: 147 FNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIADKKKR 202
Query: 130 XXXXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRS 26
KS AEY KLLAQR KE + RR E + +RRS
Sbjct: 203 IAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRS 237
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = -2
Query: 343 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 185
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -2
Query: 499 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 326
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 325 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 236
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 86 CTEKEGIQGASPGRDQTQAVSFN 18
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +1
Query: 448 LIYVFSLHRGAVCNMSGPLTSEDEHGCLS-----RRPVSSGILACRCRQRHEVHSPSIHR 612
L+Y+F + G + + + E+E G S R +++G+ C HE + P +HR
Sbjct: 504 LVYIF-VRNGDLSSALHRKSGEEEEGLQSLDWIKRLKIATGVAEALCYLHHECNPPMVHR 562
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 109 EAEYAKLLAQRKKESKVRRQEEIKRRR 29
+ E K++ Q K+E + R+QEE+ R R
Sbjct: 258 QEEQKKMVLQEKQEQEKRKQEELNRER 284
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 242 LGWEHAFDDITTYIIFFAKV 301
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 212 MSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 391
++GF +FFSFLG FD +I + L+ G T G + ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159
Query: 392 A 394
+
Sbjct: 160 S 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,453,239
Number of Sequences: 37544
Number of extensions: 392739
Number of successful extensions: 1163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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