Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b05
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 241 3e-64
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 28 5.1
Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical p... 27 9.0
Z74030-19|CAA98449.2| 841|Caenorhabditis elegans Hypothetical p... 27 9.0
Z72508-10|CAA96644.2| 841|Caenorhabditis elegans Hypothetical p... 27 9.0
U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical pr... 27 9.0
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ... 27 9.0
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 241 bits (590), Expect = 3e-64
Identities = 125/220 (56%), Positives = 150/220 (68%)
Frame = -2
Query: 661 IFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR 482
+F+EKRM EV D LGDEWKGYV+R+ GGNDKQGFPMKQG+LTN RVRLL+ KG SCYR
Sbjct: 26 LFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYR 85
Query: 481 PRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLF 302
R++GERKRKSVRGCIVDAN+S L+LVIV+KG EI GLTD +PR+LGPKRASKIRKLF
Sbjct: 86 ERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLF 145
Query: 301 NLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXX 122
NL+K DDV +YV+ +G + APKIQRL+TP +
Sbjct: 146 NLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPARIARKKYLLRQKRNQKIK 201
Query: 121 XKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKS 2
+ A Y KLLA K SK +I RRRS++ S+S
Sbjct: 202 MRDDAAAYHKLLA---KYSKEEHDAKIARRRSSASHHSES 238
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 32 PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSE 151
P F ++ +G L+++C Q SIFS+ L + + +L ++
Sbjct: 70 PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTD 109
>Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical
protein F25H5.5 protein.
Length = 725
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 321 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 196
PKS+ S KK + MS+ + + +KM D HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146
>Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical
protein T20B3.15 protein.
Length = 349
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 68 FLLSLCKQFSIFSLRGLALSETLLL 142
FL+S FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307
>Z74030-19|CAA98449.2| 841|Caenorhabditis elegans Hypothetical
protein F28H7.10a protein.
Length = 841
Score = 27.5 bits (58), Expect = 9.0
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +2
Query: 44 LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETVTSALQNYRGD*PLDLR 205
L+L + LGF+ C + LR A +E L ET ++ NY +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487
Query: 206 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 322
C + +S + + GW +I T I+ ++ L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524
>Z72508-10|CAA96644.2| 841|Caenorhabditis elegans Hypothetical
protein F28H7.10a protein.
Length = 841
Score = 27.5 bits (58), Expect = 9.0
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +2
Query: 44 LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETVTSALQNYRGD*PLDLR 205
L+L + LGF+ C + LR A +E L ET ++ NY +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487
Query: 206 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 322
C + +S + + GW +I T I+ ++ L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524
>U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical
protein ZK328.4 protein.
Length = 532
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 382 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSK-EDDVRRYVVKRVLPAKEGKENAKPRHK 209
Q P + D N R PK K K+ +LS E+D + V P+KE KE K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKE-KEEKKQRTK 166
>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
protein Y48G1C.5 protein.
Length = 1161
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 412 LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 263
L L +K QE+ P +GPK A +IR L L + + +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,751
Number of Sequences: 27780
Number of extensions: 312161
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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