Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b04
         (612 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2370|AAF57935.1|  394|Drosophila melanogaster CG6472-PA...    29   4.9  
BT001476-1|AAN71231.1|  607|Drosophila melanogaster LD19244p pro...    29   6.5  
AF145609-1|AAD38584.1|  974|Drosophila melanogaster BcDNA.GH0283...    29   6.5  
AE014298-2568|AAO41693.1|  975|Drosophila melanogaster CG8611-PB...    29   6.5  
AE014298-2567|AAF48727.2|  974|Drosophila melanogaster CG8611-PA...    29   6.5  
AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA...    29   6.5  

>AE013599-2370|AAF57935.1|  394|Drosophila melanogaster CG6472-PA
           protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 343 PSKRCAPQQMFLLCRTTGRVPFF 275
           P++RC P  MF +CR  G  P F
Sbjct: 287 PAQRCEPSDMFGICREPGGGPAF 309


>BT001476-1|AAN71231.1|  607|Drosophila melanogaster LD19244p
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = -2

Query: 494 THGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 315
           T   V NK          KS G + +  E  V  P K+S K +Q      A +   TT D
Sbjct: 463 TEDEVGNKEDGEKDKQKSKSSGSSPSSSEDEV--PLKRSNKFKQPPAKKKARKL--TTLD 518

Query: 314 VSSLQNHGESAVFQ 273
           VSS ++HG    F+
Sbjct: 519 VSSEEDHGSDEDFK 532


>AF145609-1|AAD38584.1|  974|Drosophila melanogaster BcDNA.GH02833
           protein.
          Length = 974

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -2

Query: 509 RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 330
           R ++   G  D + S  ++     SGG +  ++     K  KKS  ++   ++     T 
Sbjct: 195 RQKRREEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEESATS 254

Query: 329 RTTADVSSLQNHGE 288
               D SS Q+ G+
Sbjct: 255 DEEPDESSAQSPGQ 268


>AE014298-2568|AAO41693.1|  975|Drosophila melanogaster CG8611-PB,
           isoform B protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -2

Query: 509 RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 330
           R ++   G  D + S  ++     SGG +  ++     K  KKS  ++   ++     T 
Sbjct: 196 RQKRREEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEESATS 255

Query: 329 RTTADVSSLQNHGE 288
               D SS Q+ G+
Sbjct: 256 DEEPDESSAQSPGQ 269


>AE014298-2567|AAF48727.2|  974|Drosophila melanogaster CG8611-PA,
           isoform A protein.
          Length = 974

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = -2

Query: 509 RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTL 330
           R ++   G  D + S  ++     SGG +  ++     K  KKS  ++   ++     T 
Sbjct: 195 RQKRREEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEESATS 254

Query: 329 RTTADVSSLQNHGE 288
               D SS Q+ G+
Sbjct: 255 DEEPDESSAQSPGQ 268


>AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA
            protein.
          Length = 2759

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = -2

Query: 494  THGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 315
            T   V NK          KS G + +  E  V  P K+S K +Q      A +   TT D
Sbjct: 1619 TEDEVGNKEDGEKDKQKSKSSGSSPSSSEDEV--PLKRSNKFKQPPAKKKARKL--TTLD 1674

Query: 314  VSSLQNHGESAVFQ 273
            VSS ++HG    F+
Sbjct: 1675 VSSEEDHGSDEDFK 1688


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,388,060
Number of Sequences: 53049
Number of extensions: 497205
Number of successful extensions: 1438
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)