Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b02
         (377 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   0.77 
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   0.77 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   7.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   7.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   7.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     20   9.5  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 182 LYVVLWLQLTMFEAIRYLLPLGAVT 108
           +YV+L++  T+F A  ++  +G VT
Sbjct: 141 VYVILYILATVFLAYVWICEMGVVT 165


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 182 LYVVLWLQLTMFEAIRYLLPLGAVT 108
           +YV+L++  T+F A  ++  +G VT
Sbjct: 141 VYVILYILATVFLAYVWICEMGVVT 165


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 118 APSPSSPDIACC 83
           AP PS P ++ C
Sbjct: 127 APGPSDPSVSSC 138


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 168 VAPADNVRSHPLPAAPGRRHLPLRTSPAAASRERQNLQI 52
           V P  +V+S     +PG  H   RTSP+    +   L++
Sbjct: 139 VTPNCDVKSSV--CSPGSGHQDSRTSPSGQHLQELGLRL 175


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 168 VAPADNVRSHPLPAAPGRRHLPLRTSPAAASRERQNLQI 52
           V P  +V+S     +PG  H   RTSP+    +   L++
Sbjct: 139 VTPNCDVKSSV--CSPGSGHQDSRTSPSGQHLQELGLRL 175


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 168 VAPADNVRSHPLPAAPGRRHLPLRTSPAAASRERQNLQI 52
           V P  +V+S     +PG  H   RTSP+    +   L++
Sbjct: 139 VTPNCDVKSSV--CSPGSGHQDSRTSPSGQHLQELGLRL 175


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 138 PLPAAPG 118
           PLPAAPG
Sbjct: 252 PLPAAPG 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,060
Number of Sequences: 336
Number of extensions: 1132
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)