Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b02
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.42 
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   3.0  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   5.2  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   5.2  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    24   6.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   6.9  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   9.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 249  LAELPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPA 85
            +++LPP      +PS   S+++    +VAPA    S   P+     H+P    PA
Sbjct: 1482 VSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPA 1536



 Score = 25.0 bits (52), Expect = 3.9
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = -3

Query: 249  LAELPPRTQR-AYIPSSPWSISRAVRRAV-APADNVRSHP----LPAAPGRRHLPLRTSP 88
            +A+ PP +   A  PSS    S++    V +PA     HP    L +AP    +P R+SP
Sbjct: 1501 VAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSMPHRSSP 1560

Query: 87   AAASRERQNLQII 49
             A     Q  Q I
Sbjct: 1561 YAPQEPVQKPQAI 1573


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 168 VAPADNVRSHPLPAAPGRRHLPLRTS 91
           + P  N+R   +P  P    LP+RTS
Sbjct: 650 IPPLSNMRRGSVPIIPSSASLPMRTS 675


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 97  PERKVTAPRGSR*RMASNIVSWSHSTTYS 183
           PE  VT+P  S     S  + WS  TT S
Sbjct: 107 PEPHVTSPTKSEFATTSTCMKWSSKTTKS 135


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 207 MEYKRAGYEGEVPQVDADP 263
           +E+  AG++G V +VD DP
Sbjct: 365 LEFVHAGHKGTVNEVDFDP 383


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 206 LALGASLGLYVVLWLQ 159
           +ALGAS G Y++ W+Q
Sbjct: 530 VALGASYGGYMINWIQ 545


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 156 DNVRSHPLPAAPGRRHL 106
           DN+ + P P +PGR  L
Sbjct: 833 DNIANFPFPTSPGRSRL 849


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 252 QLAELPPRTQRAYIPSSPWSISRAVRRA 169
           Q++ L P T+ A  P SP  +  ++RRA
Sbjct: 116 QVSYLSPHTKLAVRPPSPKMVVDSIRRA 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,732
Number of Sequences: 5004
Number of extensions: 17766
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)