Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b02
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 66 9e-12
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 37 0.005
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 33 0.099
11_06_0610 - 25449085-25453284 32 0.17
10_08_0332 - 16843295-16843356,16843884-16846656 31 0.40
06_02_0151 - 12299935-12300189,12300713-12300986,12301072-123013... 30 0.69
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 29 0.92
06_01_0337 - 2432823-2432933,2433280-2433373,2434079-2434170,243... 29 1.2
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 29 1.2
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 28 2.1
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837 28 2.8
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 28 2.8
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 2.8
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 28 2.8
02_01_0382 - 2772378-2773544 27 3.7
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 27 4.9
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 27 4.9
04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355... 27 4.9
03_06_0305 - 33013315-33013449,33013554-33013691,33013806-330138... 27 4.9
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567... 27 4.9
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 27 6.5
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89... 27 6.5
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 27 6.5
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 27 6.5
07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509 26 8.6
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 26 8.6
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 26 8.6
03_02_0847 + 11721847-11722294,11723043-11723108,11723276-117233... 26 8.6
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956... 26 8.6
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 66.1 bits (154), Expect = 9e-12
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = -1
Query: 371 LAHTXRXAEARPAXALSDVCSXXXXXXXXXXXXXXARIGINLRNFPLVPS----ALIFHL 204
++H R E RP LS + R+G+NL+NFP +P+ A +FH
Sbjct: 529 ISHIFRSPEKRPPKELSFAFTGLTLLPIVGFLIGLMRLGVNLKNFPSLPAPAAFASLFHA 588
Query: 203 ALGASLGLYVVLWLQLTMFEAIRYLLPLGAVTFLSGHRLL 84
+GA L LYV+ W++L +F ++YL LG GHR L
Sbjct: 589 GIGAVLLLYVLFWIKLDLFTTLKYLSFLGVFLVFVGHRAL 628
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 82 CSRRCPERKVTAPRGSR*RMASNIVSWSHSTTYSPRDAPRARWNISA 222
CS +CP RK + P G+ R + S + S T S R R RW A
Sbjct: 2 CSTKCPRRKPSRPAGAALRKTGSAPSPTRSCTTSCRSCGRGRWRAPA 48
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 32.7 bits (71), Expect = 0.099
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 195 SISRAVR-RAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASR 73
S AVR RA + A +R+ PLP+AP RR SP AA+R
Sbjct: 10 SFLAAVRGRAASSAPRIRAAPLPSAPRRRVPSSAFSPFAAAR 51
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.9 bits (69), Expect = 0.17
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -3
Query: 237 PPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSP 88
PP T Y PS P S A + P S P PA G P ++P
Sbjct: 596 PPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTP 645
Score = 29.5 bits (63), Expect = 0.92
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 237 PPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSP 88
PP ++PS P S + P S P PA G P ++SP
Sbjct: 695 PPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSP 744
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 30.7 bits (66), Expect = 0.40
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Frame = -3
Query: 252 QLAELPPRTQRAYIPSSPWSISRAVRRAVAPAD---NVRSHP----LPAAPG--RRHLPL 100
QL +L +IP+S ++S + PA N S P +P P RR P
Sbjct: 776 QLLDLASNVLTGFIPTSFGNLSSMTQAKTLPATEYFNAESSPFQPEVPQVPKPHRRREPK 835
Query: 99 RTSPAAASRERQNLQIIIKKETFVHIKLL 13
SP SR+R ++Q +ETF +L
Sbjct: 836 NQSPLDQSRDRVSIQWKGHEETFQRTAML 864
>06_02_0151 -
12299935-12300189,12300713-12300986,12301072-12301378,
12301467-12301714,12303181-12303480,12303564-12303620,
12304831-12304940,12305053-12305382
Length = 626
Score = 29.9 bits (64), Expect = 0.69
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 240 LPPRTQRAYIPSSPWS---ISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSP 88
+PP + SSP +S RRA A PLPAA RR LPLR P
Sbjct: 1 MPPHLSSSLFSSSPLPTALLSSLTRRARALLP--LPLPLPAASTRRRLPLRRGP 52
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 29.5 bits (63), Expect = 0.92
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -3
Query: 252 QLAELPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASR 73
+ A++ R ++ I S S S A +A+ P D V S + +P+ +SPA+ +R
Sbjct: 320 EFAQIARRKNKSVISSDEAS-SSAGDQALVPVDPVTSEASSSVASNAVVPVDSSPASGTR 378
Query: 72 ERQ 64
R+
Sbjct: 379 TRE 381
>06_01_0337 -
2432823-2432933,2433280-2433373,2434079-2434170,
2434565-2434679,2435253-2435335,2435544-2435654,
2435884-2435971,2436004-2436326
Length = 338
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -3
Query: 180 VRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAA 79
+RR + PA P PAAP R LPLR SP A
Sbjct: 15 LRRRLLPAPP--RAPSPAAPPRLRLPLRRSPPPA 46
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3
Query: 240 LPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAA 79
L R R +P+S + R RR +AP VR+ PG +P RT+PA A
Sbjct: 15 LQRRAPRGILPAS-LPVERPARRRLAPG--VRAASGIPGPGGSPVPRRTTPAPA 65
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 61 VLSFTRRCSRRCPERKVTA 117
VL F RC RCPERK A
Sbjct: 454 VLEFFERCGFRCPERKGVA 472
>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
Length = 730
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 213 IPSSPWSISRAVRRAV--APADNVRSHPLPAAPG 118
+PSSP RA R + A A + R PLPA PG
Sbjct: 65 LPSSPLPSLRASRWIIFAAAAHHPRHRPLPAVPG 98
>06_03_0437 -
20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 61 VLSFTRRCSRRCPERKVTA 117
VL F C RCPERK TA
Sbjct: 156 VLEFFESCGFRCPERKGTA 174
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 2.8
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 249 LAELPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAAS 76
LA P T +P +P + + + PAD + P PA+P LP T P AAS
Sbjct: 24 LAATTPTTSP--LPLAPAAAASSSNPNATPADTTPTSPPPASP---PLPSATPPLAAS 76
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 228 TQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRR 112
T + +PS W I+ R +AP D+V P A GRR
Sbjct: 109 TPTSSLPSPSWVINSPSSRPLAPPDSVDVIPPLAIVGRR 147
>02_01_0382 - 2772378-2773544
Length = 388
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 234 PRTQRAYIPSSPWSISRAVRR-AVAPADNVRSHPLPAAPGRRHL 106
PR+ P+SP S S A RR P S P AP R HL
Sbjct: 21 PRSASGKAPTSPPSSSNASRRHHQQPPRASASTPATPAPSRHHL 64
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 237 PPRTQRAY---IPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASRE 70
PP +A+ IP+S S S + A A +P + GRR PLR + +++S +
Sbjct: 13 PPEVAKAFSSSIPASSSSSSSSSSTTTAAASLPLRAAVPPSSGRRIPPLRCASSSSSSQ 71
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 203 ALGASLGLYVVLWLQLTMFEAIRYLLPLGAVTFLSGHRLL 84
A+ SLG Y+ L L + E +LP A T+ S H +L
Sbjct: 9 AIPISLGAYLKLHHPLLLIEHYTLVLPYLAFTYTSRHSIL 48
>04_04_0151 +
23134467-23134627,23134657-23134803,23135413-23135512,
23135554-23135638,23135767-23136419
Length = 381
Score = 27.1 bits (57), Expect = 4.9
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -3
Query: 237 PPRTQRAYIPSSPWSISRAVRRA------VAPADNVRSHPLPAAPGRRHLPLRTSPAAAS 76
PPR + +P P S+ R +RR VA A +V + + P H P R SPAAAS
Sbjct: 259 PPRRSSSPVP--PLSLRRILRRPRPTPELVAGAVSVTTRRILRRPCD-HAPRRNSPAAAS 315
>03_06_0305 -
33013315-33013449,33013554-33013691,33013806-33013883,
33013986-33014062,33014439-33014982
Length = 323
Score = 27.1 bits (57), Expect = 4.9
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3
Query: 228 TQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASRER 67
T +A PSSP + +R A V + LPAA L L +PA A ER
Sbjct: 4 TVKASSPSSP-ATTRLTGALHGGAARVAARKLPAAAVAASLTLDRAPAPAGAER 56
>01_07_0291 +
42555233-42555444,42556515-42556550,42556652-42556796,
42556885-42556938,42557130-42557260,42557830-42558056,
42558670-42558846,42558928-42559076
Length = 376
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 132 PAAPGRRHLPLRTSPAAASRERQ 64
P+ P H+PL SPA+++R R+
Sbjct: 23 PSPPASSHVPLPRSPASSARPRR 45
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 201 PWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASR 73
P ++S A RR +PA + + P P+ G P S ASR
Sbjct: 182 PPAVSAAKRRFSSPAPSKQRDPSPSVKGGASRPSSPSVKGASR 224
>11_01_0115 -
889159-889921,889962-890053,890141-890359,890738-891835
Length = 723
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 201 PWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASR 73
P ++S A RR +PA + + P P+ G P S ASR
Sbjct: 182 PPAVSAAKRRFSSPAPSKQRDPSPSVKGGASRPSSPSVKGASR 224
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 26.6 bits (56), Expect = 6.5
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -3
Query: 246 AELPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASRER 67
A PP + R+ S S S +R+ A + P P AP P A A+RER
Sbjct: 109 AHTPPGSGRSLSRCS--STSSRIRKKFAWLRSPSPAPAPRAPTPSEPPPPREAAMAARER 166
Query: 66 QNLQ 55
+ +Q
Sbjct: 167 RRIQ 170
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 142 PSATCCPWAPSPSSPDIACCSVS 74
P++ P PSP+SP + C VS
Sbjct: 127 PASIVAPAVPSPTSPLLTCAEVS 149
>07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509
Length = 562
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 168 VAPADNVRSHPLPAAPGRR 112
V P++ VRS PLP +PG R
Sbjct: 394 VGPSEFVRSLPLPKSPGGR 412
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 234 PRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRR 112
PR +R S S SR+ RR+++PA N + P G R
Sbjct: 190 PRARRELERSRSLSYSRSPRRSISPAANEKKRS-PTPDGSR 229
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 26.2 bits (55), Expect = 8.6
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = -3
Query: 258 RHQLAELPPRTQRAYIPS---SPWSISRAVRRAVAPADNVRS----HPLPAAPGRRHLPL 100
R Q + PP + + P+ SP + RA V+P + R+ PL A+PGR +
Sbjct: 37 RRQQRKQPPSSSTSSEPNATTSPLASPRAAANVVSPLASPRAAGDISPLAASPGRAQQEM 96
Query: 99 RTSPAAASRER 67
+S + R
Sbjct: 97 SSSRCTLALRR 107
>03_02_0847 +
11721847-11722294,11723043-11723108,11723276-11723358,
11723585-11723673,11723783-11723906
Length = 269
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 249 LAELPPRTQRAYIPSSPWS 193
L L PR RA + SSPW+
Sbjct: 23 LTSLQPRAARAQVASSPWA 41
>02_02_0379 +
9565001-9565515,9565553-9565833,9565884-9566084,
9566253-9566309,9566955-9567019,9567199-9567420
Length = 446
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 142 PSATCCPWAPSPSSPDIA 89
P+A PW P+PSS D A
Sbjct: 48 PAAALLPWLPAPSSGDDA 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,360,549
Number of Sequences: 37544
Number of extensions: 137097
Number of successful extensions: 650
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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