Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b02
         (377 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             25   0.92 
Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             24   2.1  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   3.7  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    23   3.7  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         22   6.5  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    22   8.6  

>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 225 QRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHL 106
           Q+    SSP+S   A+    AP  N R  P+P  P  R L
Sbjct: 530 QKHLYTSSPFSEFLALDMKEAPTTNPRIVPIPTFPQIRKL 569


>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 177 VQPERCSKG*MEYKRAGYEGEV 242
           + PE C +   E+ RAG EG V
Sbjct: 30  LHPEGCVRSREEHARAGQEGNV 51


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 221 ALIFHLALGASLGLYVVLWLQLT 153
           A + HLA+  ++G+ VVL+L  T
Sbjct: 580 AAVLHLAVCTAVGVVVVLFLCFT 602


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 102 LRTSPAAASRERQNLQIIIKKET 34
           +RT+PA+      N QII K++T
Sbjct: 181 IRTAPASPFPSAPNQQIIYKEQT 203


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 79  RCSRRCPERKVTAPRGSR 132
           RC+R  P R +   RG R
Sbjct: 8   RCARASPSRPILTTRGRR 25


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = -1

Query: 215  IFHLALGASLGLYVVLWL 162
            +FH +L +++  ++V+W+
Sbjct: 1235 LFHASLYSTIATFIVIWV 1252


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,370
Number of Sequences: 2352
Number of extensions: 4396
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 28646721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)