Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b02
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88174-4|AAB42275.1|  280|Caenorhabditis elegans Hypothetical pr...    70   6e-13
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    31   0.36 
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    27   4.5  
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    27   4.5  

>U88174-4|AAB42275.1|  280|Caenorhabditis elegans Hypothetical
           protein M01A10.3 protein.
          Length = 280

 Score = 69.7 bits (163), Expect = 6e-13
 Identities = 32/97 (32%), Positives = 54/97 (55%)
 Frame = -1

Query: 371 LAHTXRXAEARPAXALSDVCSXXXXXXXXXXXXXXARIGINLRNFPLVPSALIFHLALGA 192
           ++H  R  E RP+  +SD+ +              +++GIN +N P  P   IFH+ L  
Sbjct: 174 ISHIFRQPEKRPSALISDLFTIICLSPLLILVVLWSQVGINFQNAPASPWVPIFHVGLIG 233

Query: 191 SLGLYVVLWLQLTMFEAIRYLLPLGAVTFLSGHRLLQ 81
             G+Y + W+Q  MF  ++YL  LG +TF++G+R+L+
Sbjct: 234 IFGIYFMFWVQFDMFVTLKYLAVLGFLTFVAGNRVLR 270


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 249 LAELPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSP 88
           +A+ PP   +  +  +P  +++A      PA   + H  PA P  R +P++  P
Sbjct: 88  VAQAPPAQAKPTVQQAPILVAQAPPN--PPAPQAQQHQAPAPPAARQIPVQQPP 139


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 142 PSATCCPWAPSPSSPDIACC 83
           P+A CCP  P P+   + CC
Sbjct: 116 PAAPCCPPPPPPTPSPLVCC 135


>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -3

Query: 243 ELPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASR 73
           +LPP      +P    S S     +V+PA    S P P+ P  R   L   P  A R
Sbjct: 280 DLPPTEMAPTLPQISTS-SNGASPSVSPASTSPSGPAPSIPPPRPPALAPPPPVAPR 335


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -3

Query: 243 ELPPRTQRAYIPSSPWSISRAVRRAVAPADNVRSHPLPAAPGRRHLPLRTSPAAASR 73
           +LPP      +P    S S     +V+PA    S P P+ P  R   L   P  A R
Sbjct: 280 DLPPTEMAPTLPQISTS-SNGASPSVSPASTSPSGPAPSIPPPRPPALAPPPPVAPR 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,029,877
Number of Sequences: 27780
Number of extensions: 103359
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)