Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b02
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 118 APSPSSPDIACCSVS*KTKPPNNY 47
           +PSPSSP     SVS  +    NY
Sbjct: 90  SPSPSSPSSFFSSVSPTSLGSENY 113


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 246 AELPPRTQRAYIPSSPWSIS 187
           A  PP+ Q    P+SP+ +S
Sbjct: 247 ATKPPKPQTKTKPTSPYHVS 266


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 166 HSTTYSPRDAPRARWNISALG 228
           HS T SP+  P   W    +G
Sbjct: 220 HSKTKSPKLRPYPNWEWHTVG 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,175
Number of Sequences: 438
Number of extensions: 1322
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)