Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b01
(158 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n... 51 6e-06
UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2; Cryptos... 49 2e-05
UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5; ... 48 4e-05
UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative... 48 6e-05
UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1; B... 47 7e-05
UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62; Fungi/... 47 7e-05
UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55; Euka... 46 2e-04
UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29; Euka... 46 2e-04
UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n... 42 0.002
UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1; Encepha... 40 0.011
UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3; ... 39 0.026
UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8; Archae... 38 0.059
UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilu... 33 1.3
UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, wh... 32 2.9
UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3; Archae... 32 2.9
>UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L34e - Antonospora locustae (Nosema locustae)
Length = 113
Score = 50.8 bits (116), Expect = 6e-06
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPA 9
N SNQ +I RTPG R VY P ++P+C +C+S RGI RPA
Sbjct: 14 NNASNQKKIRRTPGNRRVYIPKKKPGRVPKCVKCRSKLRGIDICRPA 60
>UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L34 -
Cryptosporidium parvum Iowa II
Length = 138
Score = 48.8 bits (111), Expect = 2e-05
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
NT SN+ R+V+TPGGR + Q + P+CG CK GI P E
Sbjct: 17 NTPSNRVRVVKTPGGRNLIQNIGKVYSRPKCGDCKKPLAGIPACAPYE 64
>UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5;
Plasmodium|Rep: Ribosomal protein L34e, putative -
Plasmodium yoelii yoelii
Length = 164
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
NTKSN+ R +RTPGG+ + P+C CK+ +G+ RPA+
Sbjct: 14 NTKSNKVRPIRTPGGKLTIHVIKKKAGKPKCADCKNPIQGVKALRPAD 61
>UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative;
n=10; Eukaryota|Rep: Ribosomal protein L34 protein,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 192
Score = 47.6 bits (108), Expect = 6e-05
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
NT+SN+ RI++TPGG Y ++ P+CG C GI RP E
Sbjct: 90 NTRSNKVRIIKTPGGELRYLHIKKKGTAPKCGDCGIKLPGIPALRPRE 137
>UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1;
Babesia bovis|Rep: Ribosomal protein L34, putative -
Babesia bovis
Length = 157
Score = 47.2 bits (107), Expect = 7e-05
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARP 12
NT+SN+ R V+TPGGR V Q + P+CG CK GI RP
Sbjct: 14 NTRSNKQRKVKTPGGRLVVQRRVKVAQGPKCGDCKCKLAGIPALRP 59
>UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62;
Fungi/Metazoa group|Rep: 60S ribosomal protein L34 -
Homo sapiens (Human)
Length = 117
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
L NT SN+ R+ RTPG R VY Y K P+ CG C RG+ RP
Sbjct: 11 LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61
>UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55;
Eukaryota|Rep: 60S ribosomal protein L34-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 121
Score = 46.0 bits (104), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
NT+SN+ ++V+TPGG Q+V P+CG C S +GI RP +
Sbjct: 14 NTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQ 61
>UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29;
Eukaryota|Rep: 60S ribosomal protein L34-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 120
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/47 (46%), Positives = 27/47 (57%)
Frame = -1
Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
TKSNQ RIV+TPGG+ VYQ P+C +GI RP+E
Sbjct: 15 TKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSE 61
>UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n=4;
Eukaryota|Rep: 60S ribosomal protein L34a, putative -
Theileria parva
Length = 138
Score = 42.3 bits (95), Expect = 0.002
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = -1
Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARP 12
T SN + VRTPG R V + K PRCG CK G+ RP
Sbjct: 15 TPSNVVKRVRTPGARLVLHNLKKVGKRPRCGDCKRTLAGVSAVRP 59
>UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L34
- Encephalitozoon cuniculi
Length = 110
Score = 39.9 bits (89), Expect = 0.011
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -1
Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
T+SN+ R VRTP G+ V + V K RC +C + I RPAE
Sbjct: 14 TRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAE 60
>UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L34 - Entamoeba histolytica HM-1:IMSS
Length = 137
Score = 38.7 bits (86), Expect = 0.026
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARP 12
NTKSN RIV+T GG Q+ RCG C GI RP
Sbjct: 14 NTKSNGIRIVKTAGGNMTVQHRQKISNGVRCGDCGCVLAGIRHIRP 59
>UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8;
Archaea|Rep: 50S ribosomal protein L34e - Pyrococcus
abyssi
Length = 91
Score = 37.5 bits (83), Expect = 0.059
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
++S + + VRTPGGR V + KI C C GI RP E
Sbjct: 7 SRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVE 53
>UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L34e - Thermofilum
pendens (strain Hrk 5)
Length = 91
Score = 33.1 bits (72), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGI 27
++S + ++VRTPGGR + P+C C +G+
Sbjct: 8 SRSKKRKLVRTPGGRLALHVIDKKHDYPKCAICGRPIQGV 47
>UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 108
Score = 31.9 bits (69), Expect = 2.9
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 149 NTKSNQXRIVRTPGGRXVYQY 87
NT+SN+ R V+TPGG V QY
Sbjct: 14 NTRSNKIRKVKTPGGNVVVQY 34
>UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3;
Archaea|Rep: 50S ribosomal protein L34e - Methanopyrus
kandleri
Length = 113
Score = 31.9 bits (69), Expect = 2.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 119 RTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
RTPGGR V + P+CG C G+ R E
Sbjct: 17 RTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVE 54
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,300,893
Number of Sequences: 1657284
Number of extensions: 1223102
Number of successful extensions: 1965
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1964
length of database: 575,637,011
effective HSP length: 32
effective length of database: 522,603,923
effective search space used: 10452078460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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