Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b01
         (158 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    19   4.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    19   4.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   4.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    19   5.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    18   7.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    18   7.8  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 19.0 bits (37), Expect = 4.5
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -3

Query: 75  QEDPKVWSVQEXXPW 31
           +EDP  WS      W
Sbjct: 253 KEDPNYWSQGSYDDW 267


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 19.0 bits (37), Expect = 4.5
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -3

Query: 75  QEDPKVWSVQEXXPW 31
           +EDP  WS      W
Sbjct: 260 KEDPNYWSQGSYDDW 274


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.0 bits (37), Expect = 4.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 86   HTDKPSGHPVSLLFF 130
            H DK +GH   L ++
Sbjct: 2518 HWDKQTGHVAPLYYY 2532


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 5.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 68  SSWAX*HTDKPSGHPVSL 121
           +SWA    DK   HP ++
Sbjct: 31  ASWAIYRPDKGEYHPKNI 48


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 18.2 bits (35), Expect = 7.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 126 NSKDTGWPLGLSVC 85
           NS+   W LG  +C
Sbjct: 130 NSRPETWVLGREMC 143


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 18.2 bits (35), Expect = 7.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 126 NSKDTGWPLGLSVC 85
           NS+   W LG  +C
Sbjct: 130 NSRPETWVLGREMC 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,821
Number of Sequences: 336
Number of extensions: 285
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 33
effective length of database: 111,497
effective search space used:  2118443
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)