Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b01
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    46   9e-07
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    46   9e-07
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    23   5.4  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   7.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    22   9.5  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 45.6 bits (103), Expect = 9e-07
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
           L  NT+SN+ RI++TPG    Y ++     IPRCG      +GI   RP E
Sbjct: 11  LAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPRE 61


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 45.6 bits (103), Expect = 9e-07
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
           L  NT+SN+ RI++TPG    Y ++     IPRCG      +GI   RP E
Sbjct: 11  LAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPRE 61


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 128 RIVRTPGGRXVY 93
           RIV+ PGGR +Y
Sbjct: 175 RIVQVPGGRRIY 186


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 140 SNQXRIVRTPGGRXVYQYV 84
           SN     R+PGG+ +Y Y+
Sbjct: 290 SNISTFFRSPGGKKLYHYL 308


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 62  RCGQCKSXXRGIXPARPAER 3
           RC +CK   +G    RP  R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGR 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,304
Number of Sequences: 5004
Number of extensions: 4677
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)