Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b01
         (158 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155...    51   1e-07
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328...    51   1e-07
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381...    50   3e-07
04_03_0880 + 20517853-20518203                                         26   3.6  
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118...    25   6.3  
01_01_0771 - 5982826-5983327,5983424-5984772                           25   8.3  

>08_02_0790 -
           21214282-21214369,21214455-21214564,21215478-21215557,
           21215659-21215737
          Length = 118

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 24/47 (51%), Positives = 28/47 (59%)
 Frame = -1

Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
           TKSNQ R+V+TPGGR VYQY       P+C       +GI   RPAE
Sbjct: 15  TKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAE 61


>08_01_0372 +
           3286861-3286939,3287220-3287299,3289041-3289150,
           3289224-3289311
          Length = 118

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 24/47 (51%), Positives = 28/47 (59%)
 Frame = -1

Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
           TKSNQ R+V+TPGGR VYQY       P+C       +GI   RPAE
Sbjct: 15  TKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAE 61


>09_04_0106 -
           14636773-14636863,14636948-14637057,14638107-14638186,
           14638302-14638380
          Length = 119

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 23/47 (48%), Positives = 28/47 (59%)
 Frame = -1

Query: 146 TKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARPAE 6
           TKSNQ R+V+TPGG+ VYQY       P+C       +GI   RPAE
Sbjct: 15  TKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAE 61


>04_03_0880 + 20517853-20518203
          Length = 116

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 89  YVXXPKKIPRCGQCKS 42
           YV  P+  PRC QCKS
Sbjct: 74  YVMLPQDDPRCPQCKS 89


>07_03_1689 +
           28710936-28711129,28711283-28711341,28711858-28711892,
           28712123-28712226,28712325-28712397,28712495-28712553,
           28712656-28712721,28712815-28712898,28712995-28713059,
           28713152-28713342,28713522-28713612,28714076-28714134,
           28714732-28714872,28715214-28715321
          Length = 442

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 114 TGWPLGLSVCXXAQEDPKVWSVQEXXPW 31
           TG  +  S+C   Q+DP +W+ +    W
Sbjct: 186 TGRQIFYSLCEWGQDDPALWAGKVGNSW 213


>01_01_0771 - 5982826-5983327,5983424-5984772
          Length = 616

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 102 LGLSVCXXAQEDPKVWSVQEXXPWYP 25
           LG+ +   A   PKVW V    PW P
Sbjct: 505 LGIQLLVPAARAPKVWGV-PLVPWLP 529


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,179
Number of Sequences: 37544
Number of extensions: 34653
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)