Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b01
         (158 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34 pro...    50   1e-06
CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.                47   1e-05
CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.                47   1e-05
BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34 p...    47   1e-05
BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34 p...    47   1e-05
BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34 p...    47   1e-05
AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34 p...    47   1e-05
AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34 p...    36   0.024

>L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
           L  NT SN+ R+ RTPG R VY Y     K P+  CG C    RG+ P RP
Sbjct: 11  LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGKLRGVRPVRP 61


>CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
           L  NT SN+ R+ RTPG R VY Y     K P+  CG C    RG+   RP
Sbjct: 11  LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61


>CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
           L  NT SN+ R+ RTPG R VY Y     K P+  CG C    RG+   RP
Sbjct: 11  LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61


>BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
           L  NT SN+ R+ RTPG R VY Y     K P+  CG C    RG+   RP
Sbjct: 11  LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61


>BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
           L  NT SN+ R+ RTPG R VY Y     K P+  CG C    RG+   RP
Sbjct: 11  LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61


>BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
           L  NT SN+ R+ RTPG R VY Y     K P+  CG C    RG+   RP
Sbjct: 11  LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61


>AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CGQCKSXXRGIXPARP 12
           L  NT SN+ R+ RTPG R VY Y     K P+  CG C    RG+   RP
Sbjct: 11  LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61


>AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34
           protein.
          Length = 45

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPR--CG 54
           L  NT SN+ R+ RTPG R VY Y     K P+  CG
Sbjct: 8   LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACG 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,300,553
Number of Sequences: 237096
Number of extensions: 216661
Number of successful extensions: 336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 76,859,062
effective HSP length: 32
effective length of database: 69,271,990
effective search space used: 1385439800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)