Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b01
         (158 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    53   3e-08
U40959-5|AAA81769.1|  531|Caenorhabditis elegans Udp-glucuronosy...    25   7.2  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 24/49 (48%), Positives = 30/49 (61%)
 Frame = -1

Query: 158 LXXNTKSNQXRIVRTPGGRXVYQYVXXPKKIPRCGQCKSXXRGIXPARP 12
           L  NT SN+ R+V+TPGGR V QY+    +IP+C        GI PARP
Sbjct: 11  LSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARP 59


>U40959-5|AAA81769.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein46 protein.
          Length = 531

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   SAGLAGWIPRXXLLH*PHLGIFLGXXTY 90
           +A ++ W+P+  +LH P L +F+    Y
Sbjct: 348 NAFVSDWLPQPAILHHPRLKLFITHSGY 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,995
Number of Sequences: 27780
Number of extensions: 27116
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)