Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a24
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 199 2e-52
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 199 2e-52
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 28 0.88
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 0.88
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.0
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 6.2
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.2
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 8.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.2
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.2
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 8.2
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 8.2
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 25 8.2
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 199 bits (486), Expect = 2e-52
Identities = 95/141 (67%), Positives = 107/141 (75%)
Frame = -1
Query: 448 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 269
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 89
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 88 AAGKTVNLKRQPAPPKAAHIV 26
A GKTV L+RQPAPP AH V
Sbjct: 121 AQGKTVQLRRQPAPPATAHFV 141
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 199 bits (485), Expect = 2e-52
Identities = 95/141 (67%), Positives = 107/141 (75%)
Frame = -1
Query: 448 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 269
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 89
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 88 AAGKTVNLKRQPAPPKAAHIV 26
A GKTV L+RQPAPP AH V
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFV 141
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 27.9 bits (59), Expect = 0.88
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = +2
Query: 8 GFSVPLDDVGSFRGSWLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDA 187
G + + + SF G+ +A SLG Q +L +LSA G M D+ +
Sbjct: 487 GHDISIHRLTSFGGAG-GQHCAAIAKSLGITQ---VLVHKYSSILSAYG---MALADVVS 539
Query: 188 FRYNPSANTLVDNHTESV 241
PS+ TL D++TES+
Sbjct: 540 EVQEPSSFTLDDSNTESI 557
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 0.88
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 336 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 452
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -3
Query: 368 LHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRY 246
L H SW + R+ C +KGY PW + Y
Sbjct: 202 LDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAY 242
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 6.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 151 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 56
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 182 DAFRYNPSANTLVDNHTES 238
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 8.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 77 LAGSLGFLQ*PLILFDSLKEVLSALGV 157
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2
Query: 168 SMSSTPSADKTSLRE 124
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 8.2
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +2
Query: 53 WLSLQVDGLAGSLGF 97
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 24.6 bits (51), Expect = 8.2
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -3
Query: 362 VHESVQSWRHCRHQRQWCSSKGYA---TQSIPWKDRSRVQRYCSRS 234
+ E S HC R WCSS A TQ + V +Y S S
Sbjct: 19 IEEPKLSCCHCETCRIWCSSPFMAFSCTQKPSVSENENVGKYASSS 64
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 8.2
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = -1
Query: 349 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 197
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 196 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 113
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 8.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 383 WNYPALHVHESVQSWRHCRH 324
WN P+ H S Q+W R+
Sbjct: 113 WNQPSHPTHPSPQNWSQARY 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,768
Number of Sequences: 5004
Number of extensions: 39798
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -