Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a24
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 167 3e-42
03_01_0290 + 2246791-2247027,2248089-2248346 167 3e-42
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 34 0.071
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 33 0.16
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 32 0.22
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 32 0.22
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 32 0.29
01_01_0990 + 7847066-7847478,7847713-7848679 31 0.66
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 30 0.88
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 29 2.0
01_05_0421 + 21990034-21990392,21991691-21992681 29 2.7
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 2.7
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 4.7
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 27 6.2
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 27 6.2
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 6.2
02_02_0353 + 9276316-9276518,9276915-9277314 27 6.2
01_06_1794 - 39919363-39920025 27 6.2
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 27 8.2
09_01_0142 - 2103224-2103864,2104264-2104399 27 8.2
08_02_0830 - 21617485-21618198 27 8.2
06_03_0846 - 25328224-25330613,25330716-25330794 27 8.2
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 8.2
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 27 8.2
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 27 8.2
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 167 bits (407), Expect = 3e-42
Identities = 77/142 (54%), Positives = 104/142 (73%)
Frame = -1
Query: 448 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 269
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 89
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 88 AAGKTVNLKRQPAPPKAAHIVQ 23
A G+ ++ KRQP PK +V+
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVE 142
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 167 bits (407), Expect = 3e-42
Identities = 77/142 (54%), Positives = 103/142 (72%)
Frame = -1
Query: 448 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 269
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 89
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 88 AAGKTVNLKRQPAPPKAAHIVQ 23
A G+ ++ KRQP PK +V+
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVE 142
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 33.9 bits (74), Expect = 0.071
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 323 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETHQYPC*ACQAL 153
+++W C SK YA QS WK S++ RCDC SR+D TH+ C A
Sbjct: 117 EKKWKCDKCSKRYAVQS-DWKAHSKICG-TREYRCDCGTLFSRRDSFITHRAFCDA--LA 172
Query: 152 QVQTRLP 132
Q +RLP
Sbjct: 173 QESSRLP 179
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 32.7 bits (71), Expect = 0.16
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = -3
Query: 323 QRQW-CS--SKGYATQSIPWKDRSRVQRYC-SRS-RCDCQQACSRKDYTETHQYPC*ACQ 159
+++W C SK YA QS WK ++ C SR RCDC SR+D TH+ C A
Sbjct: 121 EKKWKCDKCSKKYAVQS-DWKAHTKT---CGSREYRCDCGTLFSRRDSFITHRAFCDALA 176
Query: 158 ALQVQTRLP*ESQRE*EATEGSQGCRQDRQP 66
+ R + + T S G + P
Sbjct: 177 EESAKARAAPPPPADEDGTSASAGAPPPQAP 207
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 32.3 bits (70), Expect = 0.22
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = -3
Query: 335 HCRH--QRQW-CS--SKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETHQYPC 171
+CR +++W C SK YA QS WK S+ RCDC SR+D TH+ C
Sbjct: 115 YCRKHGEKKWRCDKCSKRYAVQS-DWKAHSKTCG-TREYRCDCGTLFSRRDSFITHRAFC 172
Query: 170 *ACQALQVQTRLP 132
A Q R+P
Sbjct: 173 DA--LAQENARMP 183
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 323 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETHQYPC 171
+++W C SK YA QS WK +++ RCDC SRKD TH+ C
Sbjct: 139 EKKWKCDRCSKKYAVQS-DWKAHTKICG-TKEYRCDCGTIFSRKDSFITHRAFC 190
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 31.9 bits (69), Expect = 0.29
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Frame = -3
Query: 434 GLPPRHQGLVRSQVPHTWNYPALHVHESVQSWRH-CRH--QRQW-CS--SKGYATQSIPW 273
G PPR + V + + P+ + + +H CR +++W C K YA S W
Sbjct: 121 GEPPRKRVYVCPEASCVHHSPSRALGDLTGIKKHFCRKHGEKKWKCDRCGKRYAVHS-DW 179
Query: 272 KDRSRVQRYCSRSRCDCQQACSRKDYTETHQYPC*ACQALQVQTRLP*ESQRE*EATEGS 93
K S+V +CDC SR+D TH+ C AL + + T
Sbjct: 180 KAHSKVCG-TREYKCDCGTVFSRRDSFVTHRA---FCDALAQENNKLAQPMNMAAVTSAL 235
Query: 92 QGCRQDRQP 66
QG +Q P
Sbjct: 236 QGQQQAHHP 244
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 30.7 bits (66), Expect = 0.66
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 323 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETHQYPC 171
+++W C SK YA QS WK S+ RCDC SR+D TH+ C
Sbjct: 98 EKKWKCDKCSKRYAVQS-DWKAHSKTCG-TREYRCDCGTLFSRRDSFITHRAFC 149
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 30.3 bits (65), Expect = 0.88
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 323 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETHQYPC 171
+++W C SK YA S WK S+V RCDC SR+D TH+ C
Sbjct: 148 EKKWKCDKCSKRYAVHS-DWKAHSKVCG-TREYRCDCGTLFSRRDSFITHRAFC 199
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 GVLDMLNTDIDAF-RYNPSANTLVDNHTESVSSNVVHATCLSMVYFVWHTLLNCTIASDV 328
GV+++ ++ +A RYN +A+ L + TESV S + C++ + + + T
Sbjct: 239 GVIEIPYSEEEACCRYNETASILKELITESVGSEAIGVDCIADFRRLLRQMESMTSVCQE 298
Query: 329 YNVSN 343
Y +SN
Sbjct: 299 YIISN 303
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 323 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETHQYPC 171
+++W C SK YA S WK S++ +CDC SR+D TH+ C
Sbjct: 80 EKKWKCDKCSKKYAVHS-DWKAHSKICG-TREYKCDCGTIFSRRDSFITHRAFC 131
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 349 YKVGDIVDIRGNGAVQKGMPHKVY 278
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 163 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 56
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 323 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSRS-RCDCQQACSRKDYTETHQYPC 171
+++W C K YA S WK + V+ +R RCDC SRKD TH+ C
Sbjct: 121 EKRWRCERCGKRYAVHS-DWK--AHVKNCGTREYRCDCGILFSRKDSLLTHRAFC 172
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 341 WRHCRHQRQWCSSKGYATQSIPWKDRSRV 255
W H QW YAT+ I W+ R+ V
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALV 563
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 298 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKC 146
G P G T VY+V AH+ GVIV+ + I V+ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>02_02_0353 + 9276316-9276518,9276915-9277314
Length = 200
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 338 RHCRHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSRC 228
RH R +R+WC S P R+ R R+RC
Sbjct: 161 RHRRRRRRWCPSSSPRRSPAPPPGRACKGRRGGRTRC 197
>01_06_1794 - 39919363-39920025
Length = 220
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 127 RVKENERLLKEAKAAGKTVNLKRQPAPP 44
R ++ ++ EA AAG + KRQP PP
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPP 54
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQD 137
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 138 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 183
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQD 137
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 169
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 154 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 35
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -1
Query: 271 KTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRV 170
+TG ++V A+ V+ +R GR++ R+N+R+
Sbjct: 158 RTGE-FDVRANVYAVVAKRRDGGRLVLPRLNLRI 190
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 394 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 230
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -3
Query: 341 WRHCRHQRQWCSSKGYATQSIPWKDRSRV 255
W H H QW YA++ W+ R V
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLV 558
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQD 137
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,198,225
Number of Sequences: 37544
Number of extensions: 290214
Number of successful extensions: 1014
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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