Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15a24
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   194   2e-50
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.085
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.085
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.085
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   1.8  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical ...    27   5.6  
AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical ...    27   5.6  
AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical ...    27   5.6  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   9.8  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  194 bits (474), Expect = 2e-50
 Identities = 93/142 (65%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
 Frame = -1

Query: 448 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 269
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 268 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 89
           TGR++NVT  A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK
Sbjct: 61  TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120

Query: 88  AAGKTV-NLKRQPAPPKAAHIV 26
           +AG+ V  LKR P  P+ AH V
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTV 142


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 401
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 401
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 401
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 314 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 183
           WC S    T +    + +++    ++  C C Q C +  YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 314 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 183
           WC S    T +    + +++    ++  C C Q C +  YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 110 LILFDSLKEVLSALGVL 160
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 110 LILFDSLKEVLSALGVL 160
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical
           protein T28B4.1a protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 215 LVDNHTESVSSNVVHATCLSMVY 283
           + D H +++SSN  H  CL + Y
Sbjct: 246 ITDEHVDAISSNCAHLECLCVNY 268


>AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical
           protein T28B4.1b protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 215 LVDNHTESVSSNVVHATCLSMVY 283
           + D H +++SSN  H  CL + Y
Sbjct: 229 ITDEHVDAISSNCAHLECLCVNY 251


>AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical
           protein T28B4.1c protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 215 LVDNHTESVSSNVVHATCLSMVY 283
           + D H +++SSN  H  CL + Y
Sbjct: 263 ITDEHVDAISSNCAHLECLCVNY 285


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 236  SRCDCQQACSRKDYTETHQYPC*AC 162
            S  +C+QAC    Y+ +   PC AC
Sbjct: 1610 SASECKQACKTGTYSNSGLEPCSAC 1634


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 70  NLKRQPAPPKAAHI 29
           NL+R+PAPPK  H+
Sbjct: 462 NLRRRPAPPKQNHV 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,868
Number of Sequences: 27780
Number of extensions: 235348
Number of successful extensions: 850
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)