Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15a24
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.33 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/52 (19%), Positives = 19/52 (36%)
 Frame = +2

Query: 257 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERDSSMCAEPASEQV 412
           H   L  V      +  CT+  + +     +  H++   DSS+   P    +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 329 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 231
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 329 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 231
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 329 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 231
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 329 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 231
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 368 ERDSSMCAEPASEQVPGAAAVTL 436
           ERD+S+ +  +    PGA A T+
Sbjct: 636 ERDASLSSTHSHPHEPGAPATTI 658


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/51 (19%), Positives = 22/51 (43%)
 Frame = -3

Query: 407 VRSQVPHTWNYPALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRV 255
           +R  +P   N+P  ++HE   +  + +   +    K Y+   +     SR+
Sbjct: 446 IRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRI 496


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 323 DVYNVSNFVHFHVRGERDSSMCAEPASEQVPGAAAVT 433
           ++YN S+ +  ++RGE  S+       + VP    +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 320 RQWCSSKGYATQSIPWKDRSRV 255
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 290 WHTLLNCTIASDVYNV 337
           WHT+ NC   + V+ +
Sbjct: 236 WHTVGNCDGLTSVFRI 251


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 412 PWCRGGNPW 438
           PW   GNPW
Sbjct: 135 PWRTCGNPW 143


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 412 PWCRGGNPW 438
           PW   GNPW
Sbjct: 188 PWRTCGNPW 196


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 329 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 231
           R Q+ + +   Y       K+RSR +R   RSR
Sbjct: 278 REQKSYKNENSYRKYRETSKERSRDRRERGRSR 310


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 3    RRVSQFHWTM 32
            R +++FHWT+
Sbjct: 1537 RPINEFHWTL 1546


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 3    RRVSQFHWTM 32
            R +++FHWT+
Sbjct: 1533 RPINEFHWTL 1542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,033
Number of Sequences: 438
Number of extensions: 2845
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)