Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15a23
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...   119   2e-27
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   3.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   3.7  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      29   3.7  
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    27   8.5  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score =  119 bits (286), Expect = 2e-27
 Identities = 65/155 (41%), Positives = 93/155 (60%), Gaps = 9/155 (5%)
 Frame = -1

Query: 585 LFYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDK 412
           L YE  G+ V R +G+I + G NPSAEE   D+G+D  VE G+DIVLNH+LVE   + D 
Sbjct: 26  LVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDA 85

Query: 411 KSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNMNKVMKDILG--RFKELQFFTGESM- 247
             +  Y+K +MK ++  +E+   D+  V+ FK  +   +  +L   RFK L FF GE   
Sbjct: 86  SMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAA 145

Query: 246 --DCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 148
               +G VA++EYRD DGT++P +M  K  + EEK
Sbjct: 146 EGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEK 180


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 307 FVHVCFKYFNLVRRLLFQFCY*FFHI 384
           F+++C +Y    RR L  FCY  F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 414 KKSYTLYLKDYMKKLVAKLEEK 349
           +K+Y  YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 414 KKSYTLYLKDYMKKLVAKLEEK 349
           +K+Y  YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 432   TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 268
             T+ FG  D++ Y++ +KD  KKL  +  E+      +  TN  K    + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 432   TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 268
             T+ FG  D++ Y++ +KD  KKL  +  E+      +  TN  K    + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 414 KKSYTLYLKDYMKKLVAKLEEK 349
           +K+Y  YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775


>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 522  FNPSAEEADEGTDSAVESG-VDIVLNH 445
            F+PSA +ADE  D A E G VD  L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 522  FNPSAEEADEGTDSAVESG-VDIVLNH 445
            F+PSA +ADE  D A E G VD  L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -1

Query: 417 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 274
           +KK+  L L    +K + K+EEKA       K+ ++K +KD L R K+
Sbjct: 22  EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64


>U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical
           protein F09F9.5 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 355 FQFCY*FFHIVFEVQCVGFLVTEGVCF 435
           +Q C+ F H+      +GF    GVCF
Sbjct: 53  YQTCFGFMHVKIATCSIGFFALLGVCF 79


>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = -1

Query: 540 DIQIEGFNPSAEEADEGTDSAVESG-VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLV- 367
           DI+++   PS EEA+E T   +E G  + V N +  +      +K+  LYL++ +K+ + 
Sbjct: 673 DIEVKIARPSGEEAEEMT--LIEVGPKNPVKNSQNAQKLPKNAEKTTQLYLEEKLKEQLG 730

Query: 366 ---AKLEEKAPDQVEVFKTNMNKVMKDILGRFKEL 271
              AK +++   + ++ K        D L   KEL
Sbjct: 731 GPSAKTQKRRQRKEKLAKMKYKDQTDDDLELHKEL 765


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,918
Number of Sequences: 27780
Number of extensions: 255930
Number of successful extensions: 731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)