Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a16
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 121 1e-28
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 32 0.069
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 32 0.069
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 27 2.6
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 2.6
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 3.4
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 3.4
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 26 6.0
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 26 6.0
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 6.0
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 26 6.0
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 26 6.0
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 6.0
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 6.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 6.0
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 6.0
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 25 7.9
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 121 bits (291), Expect = 1e-28
Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = -1
Query: 634 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTP 455
+V+ EK Y + VG+ P +TK G F S + PK H+ F V S L +
Sbjct: 79 DVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGT 138
Query: 454 LYAT-HFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKAR 278
++ T +F+ +D++ T +GF GVMKRWGF G ASHG + +HR PG+ G +R
Sbjct: 139 IFTTDYFKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSR 198
Query: 277 VWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTV 116
V PG KM GHMG+R RT++ + + +D I G +IPG + Y+ DT+
Sbjct: 199 VLPGRKMAGHMGHRSRTVKNLLVWAVDADLECILVKG-SIPGPNKSAVYVTDTI 251
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 32.3 bits (70), Expect = 0.069
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 266
F + ID+ T +G +G RWG K +P KTHR + G A V
Sbjct: 209 FEQNEMIDVIGVTRGKGNEGTTARWGTKRLP-----RKTHRGLRKVACIGAWHPANVQWT 263
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G+ G RT KI RI
Sbjct: 264 VARAGNAGYMHRTQLNSKIYRI 285
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 32.3 bits (70), Expect = 0.069
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 266
F + ID+ T +G +G RWG K +P KTHR + G A V
Sbjct: 209 FEQNEMIDVIGVTRGKGNEGTTARWGTKRLP-----RKTHRGLRKVACIGAWHPANVQWT 263
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G+ G RT KI RI
Sbjct: 264 VARAGNAGYMHRTQLNSKIYRI 285
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 9 VHQKDEWCLQNTLLVH 56
VH + +WCLQN L+H
Sbjct: 188 VHTEIQWCLQNCSLIH 203
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 189 YFVSIRRILTPRSVLHLLPMCPGIFVPGQTRAF 287
YF ++ RILT R +L C G F P R +
Sbjct: 765 YFNTLLRILTTRCMLSAEYFCSGTFAPPDFRHY 797
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 24 EWCLQNTLLVHRFIKG*VGKGGAVLFLFNGSTVSNR*HIAPVSPGIATPNVQ 179
E L++T + +R I G + LF+++GSTVS + I I TP +Q
Sbjct: 287 EVLLRSTYIKYRMIGGIID-----LFVYSGSTVSPKYTIQQYVQSIGTPTMQ 333
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 670 IPPEEYKPMIKSNVKWVEKQKY 605
I PE +K +I+ N+ W + + Y
Sbjct: 418 IDPESHKALIEKNISWADDEYY 439
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 531 LSNIPQ*SLVTTLGSMFSAPTNIQPYF 611
+ N PQ S L + FS P N QP F
Sbjct: 316 IQNQPQQSAFQNLNTQFSLPNNSQPVF 342
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 222 VVLRFSVLIQNIMLFGHWVLQYLVKLEL 139
++ I ++ FGHW L LV L L
Sbjct: 204 IIAALGATITGLLYFGHWALYKLVILSL 231
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 222 VVLRFSVLIQNIMLFGHWVLQYLVKLEL 139
++ I ++ FGHW L LV L L
Sbjct: 204 IIAALGATITGLLYFGHWALYKLVILSL 231
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 332 DSMRSRHTLKTPPLHHSLKTSIHSF*SNVNTIPNSKMSRI*WS-AIW*SRFW*YNKSAEV 508
D +R + L PP + IH V N++ + S A W S W S +
Sbjct: 544 DVLRELNKLYIPPHREEIVREIHHAFYKV-LYANARFPSMSVSMANWESDVWSLASSTLI 602
Query: 509 PFWQHSNTVKYSTVIFGDNTRVDVFSTN 592
F QH N + T + VFST+
Sbjct: 603 DFVQHRNQHDMKKLASKMTTSLPVFSTS 630
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 222 VVLRFSVLIQNIMLFGHWVLQYLVKLEL 139
++ I ++ FGHW L LV L L
Sbjct: 193 IIAALGATITGLLYFGHWALYKLVILSL 220
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 222 VVLRFSVLIQNIMLFGHWVLQYLVKLEL 139
++ I ++ FGHW L LV L L
Sbjct: 193 IIAALGATITGLLYFGHWALYKLVILSL 220
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 222 VVLRFSVLIQNIMLFGHWVLQYLVKLEL 139
++ I ++ FGHW L LV L L
Sbjct: 204 IIAALGATITGLLYFGHWALYKLVILSL 231
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -1
Query: 670 IPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVT---KDYCGIFDSVGM 521
I EE KP++ S V W E +K + E I S+ + C ++ VG+
Sbjct: 378 ISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMIAKSIQSLPNTHLCQVYKEVGL 430
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 451 YATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMP 347
Y HF D + + ++ + + ++K GFKG+P
Sbjct: 764 YTDHFYFRDHLCVATELLGKNLYELIKSNGFKGLP 798
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 362 TPPLHHSLKT-SIHSF*SNVNTIPNSK 439
T + HSL T SIHSF ++NTI + K
Sbjct: 694 TGRIPHSLATKSIHSFLKHLNTIDSQK 720
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 473 SRFW*YNKSAEVPFWQHSNTVKYSTVIFGDN 565
SR+W Y E+P W + IFG N
Sbjct: 86 SRWWGYVNRIEIPLWMRVPAFGLYSKIFGCN 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,474
Number of Sequences: 5004
Number of extensions: 68330
Number of successful extensions: 201
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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