Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a16
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1051 + 8290395-8290760,8291611-8291820,8292874-8292978,829... 118 3e-27
02_01_0295 - 1973115-1973404,1974138-1974663 105 3e-23
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 36 0.041
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 36 0.041
04_04_0354 - 24630813-24630938,24631090-24631143,24631235-246313... 29 2.7
09_01_0015 + 370242-370306,370429-370497,371087-371161,371558-37... 29 3.6
11_06_0154 + 20707811-20708210,20709252-20709523 29 4.7
01_05_0797 + 25313226-25313330,25313464-25313545,25317573-253176... 28 6.2
>01_01_1051 +
8290395-8290760,8291611-8291820,8292874-8292978,
8293040-8293048,8294426-8294539,8294632-8294796
Length = 322
Score = 118 bits (285), Expect = 3e-27
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 3/189 (1%)
Frame = -1
Query: 631 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPL 452
VK EK+ + + +GA +TK G F + G+ KR L F V+ ++ +P GT +
Sbjct: 110 VKTAEKEGFFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALIPLGTTI 169
Query: 451 YATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIG---SGGEKA 281
HF G +D+ T +GF G MKR GF GMPASHG + +HR G+ G + G K
Sbjct: 170 TVRHFVPGQFVDVTGITKGKGFAGGMKRHGFSGMPASHGASLSHRSIGSTGQRDAPGRKR 229
Query: 280 RVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETGAMCYLFDTVLPLKR 101
+V+ KMPG MG RT++ V + +ID N+++ G +PG G+ ++ D++ K
Sbjct: 230 QVFKNRKMPGRMGGVQRTVKNVWVYQIDPARNLLYLKG-QVPGPQGSFVFVKDSIYK-KP 287
Query: 100 NKTAPPFPT 74
+ PFPT
Sbjct: 288 DIAKLPFPT 296
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 105 bits (252), Expect = 3e-23
Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 1/168 (0%)
Frame = -1
Query: 643 IKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 464
+ + VK Y + VG + +T+ G G P RHL F +
Sbjct: 88 VVTQVKTAATDGYDAVQVGYHGVREEKLTRPELGHLGKAGAPPLRHLQEFRLQSVDGYDP 147
Query: 463 GTPL-YATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGE 287
G PL +A F+ GD +DI K++ +GFQG +KR FK +HG +K+HR G+IG+G
Sbjct: 148 GQPLDFADMFKEGDLVDISGKSIGKGFQGGIKRHNFKRGLMTHG-SKSHRALGSIGAGTT 206
Query: 286 KARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGVAIPGETG 143
RV+ G KMPG MG +R +KI++ID V+ G A+PG+ G
Sbjct: 207 PGRVYKGKKMPGRMGGTKTKIRKLKIVKIDNDLKVVMIKG-AVPGKPG 253
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 35.5 bits (78), Expect = 0.041
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 266
F+ + IDI T +G++GV+ RWG +P KTHR + G ARV
Sbjct: 212 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVSYT 266
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT K+ +I
Sbjct: 267 VARAGQNGYHHRTEMNKKVYKI 288
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 35.5 bits (78), Expect = 0.041
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG--EKARVWPG 266
F+ + IDI T +G++GV+ RWG +P KTHR + G ARV
Sbjct: 212 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVSYT 266
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT K+ +I
Sbjct: 267 VARAGQNGYHHRTEMNKKVYKI 288
>04_04_0354 -
24630813-24630938,24631090-24631143,24631235-24631300,
24631423-24631488,24631593-24631751
Length = 156
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 239 VTHVSRHFCSRPNSCFFTTRTNITRSSMSFGDSMRSRHTLKTPP 370
+T V+ H N +FT + +T SS FG SM S+ T P
Sbjct: 3 MTEVANHSKRNHNESYFTGKAAVTSSSEEFG-SMTSKKPRNTSP 45
>09_01_0015 +
370242-370306,370429-370497,371087-371161,371558-371591,
371659-373132,373193-373310,373374-373419
Length = 626
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 267 EQKCLDTWVTDGEHCVVLRFSVLIQNIMLFGHWVLQYLVKLELCVIYLILC 115
E KC+D ++ E + ++ +QN +L W +Q L K +L ++ ILC
Sbjct: 300 ELKCMD--ISQAEFFPFSKKAIFLQNDVLNAIWSIQKLKKGDLKLLRAILC 348
>11_06_0154 + 20707811-20708210,20709252-20709523
Length = 223
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 421 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV-WPGTK 260
+D+ S + G M++W +G P HG+ K + GGE R+ W T+
Sbjct: 46 LDLNSGSKRSEVGGGMRQWARRGQPRCHGLEK-----AEVEYGGESRRLGWEPTR 95
>01_05_0797 +
25313226-25313330,25313464-25313545,25317573-25317660,
25318298-25318331,25318399-25319243,25319278-25319371,
25319432-25319611
Length = 475
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 267 EQKCLDTWVTDGEHCVVLRFSVLIQNIMLFGHWVLQYLVKLELCVIYLILC 115
E KC+D ++ E + ++ +QN +L W +Q L K +L ++ ILC
Sbjct: 322 ELKCMD--ISQAEFFPFSKKAIFLQNDVLNAIWSIQKLKKGDLKLLRPILC 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,441,205
Number of Sequences: 37544
Number of extensions: 429609
Number of successful extensions: 1070
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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