Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a16
(703 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ... 29 0.14
AJ302662-1|CAC35527.1| 76|Anopheles gambiae gSG9 protein protein. 26 1.00
AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha ... 25 1.7
AF457547-1|AAL68777.1| 163|Anopheles gambiae selenoprotein prot... 25 3.0
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro... 24 5.3
AJ549085-1|CAD70159.1| 529|Anopheles gambiae thioredoxin-disulf... 23 9.3
AJ549084-1|CAD70158.1| 505|Anopheles gambiae thioredoxin-disulf... 23 9.3
AJ459821-1|CAD30858.1| 502|Anopheles gambiae thioredoxin reduct... 23 9.3
>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
chain protein.
Length = 1024
Score = 29.1 bits (62), Expect = 0.14
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMP-GHMGNRWRT-L 224
DRG G+ G+ G G PG++G GE PG K P GH G R +
Sbjct: 126 DRGDPGLPGSLGYPGEKGDLGTPGPPGYPGDVGPKGE-----PGPKGPAGHPGAPGRPGV 180
Query: 223 RGVKILRIDTKYNVIWTLGVAIPGETGAM 137
GVK L K ++ + +PG+ G M
Sbjct: 181 DGVKGLP-GLKGDIGAPGVIGLPGQKGDM 208
Score = 27.1 bits (57), Expect = 0.57
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGNRWR 230
+ G +G M G G+P G+ G++G GEK P K +PG G R
Sbjct: 501 EAGAKGEMGIQGLPGLPGPAGLNGLPGMKGDMGPLGEKGDACPVVKGEKGLPGRPGKTGR 560
Score = 24.2 bits (50), Expect = 4.0
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWP 269
DRG G+M R G G+P G G G G + P
Sbjct: 598 DRGDSGLMGRPGNDGLPGPQGQRGLPGPQGEKGDQGPPGFIGP 640
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = -1
Query: 394 RGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGE 287
+GFQG G G+ G PG G GE
Sbjct: 217 KGFQGRKGMMGAPGIQGVRGPQGVKGEPGEKGDRGE 252
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 391 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 284
G G+ G +G+P G PG IG G+K
Sbjct: 609 GNDGLPGPQGQRGLPGPQGEKGDQGPPGFIGPKGDK 644
>AJ302662-1|CAC35527.1| 76|Anopheles gambiae gSG9 protein protein.
Length = 76
Score = 26.2 bits (55), Expect = 1.00
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 224 QCSPSVTHVSRHFCSRPNSCFFTTRTNITRSS 319
QCSP +R + S+P+S +T N+ + S
Sbjct: 22 QCSPFFFQYNRPYLSQPSSQLASTAANVVQRS 53
>AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha 1
chain precursor protein.
Length = 801
Score = 25.4 bits (53), Expect = 1.7
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG-EKARVWPG-TKMPGHMGNR 236
DRG G+ G+ G+P ++GV PG G G PG + +PG+ G R
Sbjct: 149 DRGRDGLP---GYPGIPGTNGVPGVPGAPGLAGRDGCNGTDGLPGLSGLPGNPGPR 201
Score = 25.4 bits (53), Expect = 1.7
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 412 RSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKA-RVWPGTKMPGHMGNR 236
R + +G QGV R G +GMP G G++G G + R +PG PG G R
Sbjct: 440 RGQMGPKGGQGVPGRPGPEGMPGDKG---DKGESGSVGMPGPQGPRGYPG--QPGPEGLR 494
Score = 25.0 bits (52), Expect = 2.3
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = -1
Query: 415 IRSKTMDRGFQGVMK--------RWGFKGMPASHGVTKTHRRPGNIGSGGEK 284
++ + +RGF+GVM R G G+P G RPG G+ GE+
Sbjct: 519 LKGQKGERGFKGVMGTPGDAKEGRPGAPGLPGRDGEKGEPGRPGLPGAKGER 570
Score = 24.6 bits (51), Expect = 3.0
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = -1
Query: 370 RWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 242
R G KG G RPG G GE R +PG MPG G
Sbjct: 584 RPGMKGDKGERGYAGEPGRPGASGVPGE--RGYPG--MPGEDG 622
Score = 24.2 bits (50), Expect = 4.0
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -1
Query: 391 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 290
G GV G+ GMP G PG G G
Sbjct: 604 GASGVPGERGYPGMPGEDGTPGLRGEPGPKGEPG 637
Score = 23.8 bits (49), Expect = 5.3
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK-MPGHMG 242
+RG+ G R G G+P G G G GE PG K PG +G
Sbjct: 593 ERGYAGEPGRPGASGVPGERGYPGMPGEDGTPGLRGE-----PGPKGEPGLLG 640
Score = 23.8 bits (49), Expect = 5.3
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -1
Query: 391 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGN 239
G G+ G KG P G+ PG G G + G PG GN
Sbjct: 691 GKMGLRGMKGDKGRPGEAGIDGAPGAPGKDGLPGRHGQTVKGE--PGLKGN 739
>AF457547-1|AAL68777.1| 163|Anopheles gambiae selenoprotein
protein.
Length = 163
Score = 24.6 bits (51), Expect = 3.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 528 LECCQKGTSAD 496
LECCQK T AD
Sbjct: 57 LECCQKDTEAD 67
>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
Length = 2051
Score = 23.8 bits (49), Expect = 5.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 190 ILYQYG-ES*HHAVFSICYPCVQAFLFQAKLVLFHHQNQYYQVF 318
++Y + E+ H+ F++ Y + + K VL H Q Y Q F
Sbjct: 1295 LVYPFASETYHYHQFNLYYDAQRTSVKNVKFVLQHKQADYDQDF 1338
>AJ549085-1|CAD70159.1| 529|Anopheles gambiae thioredoxin-disulfide
reductase protein.
Length = 529
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 622 VEKQKYGCILVGAENIDPSVVTKDYCGIFDSV 527
VEKQ G +LV E +D + + +FD+V
Sbjct: 283 VEKQPDGRLLVRYETVDEAGTATNGEDVFDTV 314
>AJ549084-1|CAD70158.1| 505|Anopheles gambiae thioredoxin-disulfide
reductase protein.
Length = 505
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 622 VEKQKYGCILVGAENIDPSVVTKDYCGIFDSV 527
VEKQ G +LV E +D + + +FD+V
Sbjct: 259 VEKQPDGRLLVRYETVDEAGTATNGEDVFDTV 290
>AJ459821-1|CAD30858.1| 502|Anopheles gambiae thioredoxin reductase
protein.
Length = 502
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 622 VEKQKYGCILVGAENIDPSVVTKDYCGIFDSV 527
VEKQ G +LV E +D + + +FD+V
Sbjct: 256 VEKQPDGRLLVRYETVDEAGTATNGEDVFDTV 287
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,616
Number of Sequences: 2352
Number of extensions: 17507
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -