Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a16
(703 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119240-1|AAM51100.1| 362|Drosophila melanogaster SD19562p pro... 312 4e-85
AE014298-2216|AAF48508.2| 362|Drosophila melanogaster CG8288-PA... 312 4e-85
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 31 1.5
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 31 1.5
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 31 1.5
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 31 1.5
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 31 1.5
AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,... 29 8.1
AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,... 29 8.1
AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,... 29 8.1
>AY119240-1|AAM51100.1| 362|Drosophila melanogaster SD19562p
protein.
Length = 362
Score = 312 bits (765), Expect = 4e-85
Identities = 135/210 (64%), Positives = 169/210 (80%)
Frame = -1
Query: 703 LQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVG 524
LQ+VDNHVIKYIPPEEY P V + K+ GCILVG+E +P+++TK+Y GIF + G
Sbjct: 125 LQIVDNHVIKYIPPEEYLPAQVPTVANLHKR--GCILVGSETTNPALLTKEYAGIFRNSG 182
Query: 523 MLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPA 344
+LPK++L RF+VSPE+ L GTPL HFRVGD +D+R KT+D GFQGV+KR GFKGMPA
Sbjct: 183 VLPKKNLARFIVSPEAQLAPGTPLNVNHFRVGDFVDVRGKTVDHGFQGVVKRHGFKGMPA 242
Query: 343 SHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGV 164
SHGVTKTHRR GNIG GGEK RVWPGTKMPGHMGNRWR ++G+++ RI+TKYNV+W G
Sbjct: 243 SHGVTKTHRRAGNIGGGGEKGRVWPGTKMPGHMGNRWRIIKGLRVWRINTKYNVMWVQGS 302
Query: 163 AIPGETGAMCYLFDTVLPLKRNKTAPPFPT 74
++ G TG + Y++DT+LP ++NK APPFPT
Sbjct: 303 SVAGPTGGLVYIYDTILPTRKNKEAPPFPT 332
>AE014298-2216|AAF48508.2| 362|Drosophila melanogaster CG8288-PA
protein.
Length = 362
Score = 312 bits (765), Expect = 4e-85
Identities = 135/210 (64%), Positives = 169/210 (80%)
Frame = -1
Query: 703 LQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVG 524
LQ+VDNHVIKYIPPEEY P V + K+ GCILVG+E +P+++TK+Y GIF + G
Sbjct: 125 LQIVDNHVIKYIPPEEYLPAQVPTVANLHKR--GCILVGSETTNPALLTKEYAGIFRNSG 182
Query: 523 MLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPA 344
+LPK++L RF+VSPE+ L GTPL HFRVGD +D+R KT+D GFQGV+KR GFKGMPA
Sbjct: 183 VLPKKNLARFIVSPEAQLAPGTPLNVNHFRVGDFVDVRGKTVDHGFQGVVKRHGFKGMPA 242
Query: 343 SHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWTLGV 164
SHGVTKTHRR GNIG GGEK RVWPGTKMPGHMGNRWR ++G+++ RI+TKYNV+W G
Sbjct: 243 SHGVTKTHRRAGNIGGGGEKGRVWPGTKMPGHMGNRWRIIKGLRVWRINTKYNVMWVQGS 302
Query: 163 AIPGETGAMCYLFDTVLPLKRNKTAPPFPT 74
++ G TG + Y++DT+LP ++NK APPFPT
Sbjct: 303 SVAGPTGGLVYIYDTILPTRKNKEAPPFPT 332
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 31.1 bits (67), Expect = 1.5
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 260
F + ID T +GF+GV RW K +P K R+ IG+ +RV
Sbjct: 222 FGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVSTTVA 278
Query: 259 MPGHMGNRWRTLRGVKILRI 200
G G RT KI RI
Sbjct: 279 RAGQKGYHHRTEINKKIYRI 298
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 31.1 bits (67), Expect = 1.5
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 260
F + ID T +GF+GV RW K +P K R+ IG+ +RV
Sbjct: 211 FGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVSTTVA 267
Query: 259 MPGHMGNRWRTLRGVKILRI 200
G G RT KI RI
Sbjct: 268 RAGQKGYHHRTEINKKIYRI 287
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 31.1 bits (67), Expect = 1.5
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 260
F + ID T +GF+GV RW K +P K R+ IG+ +RV
Sbjct: 198 FGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVSTTVA 254
Query: 259 MPGHMGNRWRTLRGVKILRI 200
G G RT KI RI
Sbjct: 255 RAGQKGYHHRTEINKKIYRI 274
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 31.1 bits (67), Expect = 1.5
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 260
F + ID T +GF+GV RW K +P K R+ IG+ +RV
Sbjct: 198 FGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVSTTVA 254
Query: 259 MPGHMGNRWRTLRGVKILRI 200
G G RT KI RI
Sbjct: 255 RAGQKGYHHRTEINKKIYRI 274
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 31.1 bits (67), Expect = 1.5
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = -1
Query: 439 FRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK 260
F + ID T +GF+GV RW K +P K R+ IG+ +RV
Sbjct: 211 FGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVSTTVA 267
Query: 259 MPGHMGNRWRTLRGVKILRI 200
G G RT KI RI
Sbjct: 268 RAGQKGYHHRTEINKKIYRI 287
>AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,
isoform C protein.
Length = 1779
Score = 28.7 bits (61), Expect = 8.1
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 242
DRG QG G G G + PGN G GE R T PG +G
Sbjct: 338 DRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRA-GATGKPGLLG 388
>AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,
isoform B protein.
Length = 1779
Score = 28.7 bits (61), Expect = 8.1
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 242
DRG QG G G G + PGN G GE R T PG +G
Sbjct: 338 DRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRA-GATGKPGLLG 388
>AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,
isoform A protein.
Length = 1779
Score = 28.7 bits (61), Expect = 8.1
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 242
DRG QG G G G + PGN G GE R T PG +G
Sbjct: 338 DRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRA-GATGKPGLLG 388
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,825,820
Number of Sequences: 53049
Number of extensions: 744610
Number of successful extensions: 2074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2065
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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