Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a16
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical pr... 148 3e-36
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 31 0.60
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 31 0.60
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 31 0.60
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 31 0.60
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 31 0.60
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 31 0.80
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 31 1.1
Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical p... 30 1.8
Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical p... 30 1.8
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 29 2.4
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 29 2.4
U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68113-2|CAA92149.2| 327|Caenorhabditis elegans Hypothetical pr... 29 4.3
U33919-1|AAA96505.1| 327|Caenorhabditis elegans MEC-5 precursor... 29 4.3
U33918-1|AAA96504.1| 327|Caenorhabditis elegans MEC-5 protein. 29 4.3
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protei... 28 7.4
U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical pr... 28 7.4
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 28 7.4
Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 9.8
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 9.8
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 9.8
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 9.8
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 9.8
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 9.8
U20861-13|ABD63242.1| 112|Caenorhabditis elegans Hypothetical p... 27 9.8
U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical p... 27 9.8
AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle colla... 27 9.8
AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle colla... 27 9.8
>U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical
protein C26E6.6 protein.
Length = 403
Score = 148 bits (359), Expect = 3e-36
Identities = 90/213 (42%), Positives = 121/213 (56%), Gaps = 3/213 (1%)
Frame = -1
Query: 703 LQVVDNHVIKYIPPEE-YKPMIKSNVKWVEKQ-KYGCILVGAENIDPSVVTKDYCGIFDS 530
L+V +NHV+ PE YK K + + VGA N DP+ T Y F
Sbjct: 128 LEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGNDDPTKYTLGYRRQFVR 187
Query: 529 VGMLPKRHLCRFVVSPESALPN-GTPLYATHFRVGDCIDIRSKTMDRGFQGVMKRWGFKG 353
G+ K L F+V+ E ALP+ G PL A HF VG + KT+D GFQG M RWG +G
Sbjct: 188 AGIPVKEKLGCFLVT-EDALPSAGQPLDARHFGVGQYVTATGKTIDWGFQGGMHRWGMRG 246
Query: 352 MPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRGVKILRIDTKYNVIWT 173
P + TK+HRR G++GS G+ AR+WPG +MPGHMG WRT+ G++I+RI+ VI+
Sbjct: 247 QP-TRRTTKSHRRIGSVGSVGD-ARIWPGKRMPGHMGYEWRTVSGLEIVRINVDKQVIYV 304
Query: 172 LGVAIPGETGAMCYLFDTVLPLKRNKTAPPFPT 74
G ++PG+ G L D + KR K+ P PT
Sbjct: 305 KG-SVPGDIGETILLKDCLQEEKRLKSG-PMPT 335
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 445 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 266
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 445 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 266
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 445 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 266
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 111 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 167
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT+ KI RI
Sbjct: 168 VARAGQKGFHHRTIINNKIYRI 189
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 445 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 266
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 445 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 266
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 111 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 167
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT+ KI RI
Sbjct: 168 VARAGQKGFHHRTIINNKIYRI 189
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/82 (32%), Positives = 34/82 (41%)
Frame = -1
Query: 445 THFRVGDCIDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPG 266
T F + ID T GF+GV RW K +P K R+ IG+ +RV
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFT 265
Query: 265 TKMPGHMGNRWRTLRGVKILRI 200
G G RT+ KI RI
Sbjct: 266 VARAGQKGFHHRTIINNKIYRI 287
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -1
Query: 391 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV 275
G QG + G +GMP G T RPG G GE RV
Sbjct: 221 GLQGQDGKKGEQGMPGPQGPTGRPGRPGPKGPKGEDGRV 259
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 542 NI*QCWNAAKKAPLQICCITRICFTKWHS 456
N C NA K AP + CC T +T+W S
Sbjct: 99 NFFHCTNATKSAPAKRCCPTGGVWTEWSS 127
>Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical
protein F32D8.7b protein.
Length = 380
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 209 NLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRS 316
N+ T++C P R C+RP + F + NI R+
Sbjct: 68 NIATSKCDPHTCDFPRQICARPAAKFQDSSANICRT 103
>Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical
protein F32D8.7a protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 209 NLNTTQCSPSVTHVSRHFCSRPNSCFFTTRTNITRS 316
N+ T++C P R C+RP + F + NI R+
Sbjct: 68 NIATSKCDPHTCDFPRQICARPAAKFQDSSANICRT 103
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = -1
Query: 421 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 242
ID T GF+GV RW K +P K R+ IG+ +RV G G
Sbjct: 169 IDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFTVARAGQKG 225
Query: 241 NRWRTLRGVKILRI 200
RT+ KI RI
Sbjct: 226 FHHRTIINNKIYRI 239
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = -1
Query: 421 IDIRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMG 242
ID T GF+GV RW K +P K R+ IG+ +RV G G
Sbjct: 169 IDTIGVTRGHGFKGVTSRWHTKKLPRK--THKGLRKVACIGA-WHPSRVAFTVARAGQKG 225
Query: 241 NRWRTLRGVKILRI 200
RT+ KI RI
Sbjct: 226 FHHRTIINNKIYRI 239
>U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical
protein T24C12.3 protein.
Length = 651
Score = 29.1 bits (62), Expect = 3.2
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = -1
Query: 643 IKSNVKWVEKQKYGCILVGAENIDPSVVTK--DYCGIFDSVGMLPKRHLCRFVVSPESAL 470
I V+++E CI+ G EN+ PS T+ D F + + HL + S L
Sbjct: 175 IPKTVEYLETHSVNCIVYGQENVFPSFFTRTSDRKAQFCTESLEEVVHLLK--TSKSLGL 232
Query: 469 PNGT----PLYATHFRVGDCIDIRSKTMDRGFQGVMKR 368
P GT P+ + GD I K +D+ Q +++
Sbjct: 233 PYGTILACPIPEKYAADGDAI---QKAIDQAVQEAIEQ 267
>Z68113-2|CAA92149.2| 327|Caenorhabditis elegans Hypothetical
protein E03G2.3 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGN 239
D G G + G G P S G PG G G A WPG+K +PG G+
Sbjct: 134 DTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPG--APGWPGSKGEDGLPGRPGS 188
>U33919-1|AAA96505.1| 327|Caenorhabditis elegans MEC-5 precursor
protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGN 239
D G G + G G P S G PG G G A WPG+K +PG G+
Sbjct: 134 DTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPG--APGWPGSKGEDGLPGRPGS 188
>U33918-1|AAA96504.1| 327|Caenorhabditis elegans MEC-5 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK----MPGHMGN 239
D G G + G G P S G PG G G A WPG+K +PG G+
Sbjct: 134 DTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPG--APGWPGSKGEDGLPGRPGS 188
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 364 GFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 236
G G P S G +PGN+G GE P + PG+ G +
Sbjct: 211 GSPGQPGSRGPEGPRGQPGNMGRPGEYGDAGPAGQ-PGNDGEQ 252
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = -1
Query: 391 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNRWRTLRG 218
G G G G P G +PG +G G + +V P PG G R L G
Sbjct: 201 GHPGARGMKGSDGQPGQPGKDGDPGKPGEMGPNGFQGKVGP-DGFPGEKGGDGRRLIG 257
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 364 GFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 236
G G P G + PG G G+ + PG + PG GNR
Sbjct: 220 GTAGRPGQPGKQGSAGNPGRKGERGQDGQPGPGGR-PGQPGNR 261
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -1
Query: 391 GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKMPGHMGNR 236
G G + G G+P G+ PG+ GSGG T PG G R
Sbjct: 165 GHPGDVGVTGMDGIPGGRGLPGYPGMPGDNGSGGANGHD-GATGQPGRSGTR 215
>U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protein
164 protein.
Length = 396
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEK 284
++G +G G G P G H PG +G GEK
Sbjct: 169 EKGDKGAPGNAGRDGAPGDDGPEGDHGHPGPMGPAGEK 206
>U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical
protein C34D10.2 protein.
Length = 675
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 403 FLIECQYNPQL*NESHIMECHLVKQILVIQQICRGAFLAAFQH 531
F+IE +PQ ++ H++ C+ +Q ++CR + F H
Sbjct: 183 FVIE---DPQWHSQDHVLSCYKTEQCRKPARLCRQGYACPFYH 222
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 466 NGTPLYATHFRVGDCIDIRSKTMDR-GFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGG 290
+G L A H G CI+ + G QG + GF G+ + G + +PG G G
Sbjct: 122 SGISLAAVHHIPGGCINCPAGPAGPPGQQGPVGPQGFPGVVGTCGPSGDDGQPGPAGPLG 181
Query: 289 EKARVWP 269
+K P
Sbjct: 182 DKGAQGP 188
>Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical
protein ZK836.1 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -1
Query: 427 DCIDIRSKTMDRGF---QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKM 257
DC D+ + F QG+ G +G P G+ +PG G G+ PG M
Sbjct: 152 DCPDVEQQPSQGCFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQ-----PG--M 204
Query: 256 PGHMG 242
PG MG
Sbjct: 205 PGEMG 209
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK-MPGHMG 242
+RG G+ + G G+P + GV PG G GE +PG PG G
Sbjct: 1069 ERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDG--YPGAPGAPGSNG 1119
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK-MPGHMG 242
+RG G+ + G G+P + GV PG G GE +PG PG G
Sbjct: 1326 ERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDG--YPGAPGAPGSNG 1376
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = -1
Query: 415 IRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV----WPGTK-MPG 251
IR G G+ G G P G +PG G GGEK +PG K PG
Sbjct: 1160 IRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPG 1219
Query: 250 HMG 242
+ G
Sbjct: 1220 YPG 1222
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = -1
Query: 415 IRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV----WPGTK-MPG 251
IR G G+ G G P G +PG G GGEK +PG K PG
Sbjct: 1159 IRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPG 1218
Query: 250 HMG 242
+ G
Sbjct: 1219 YPG 1221
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 397 DRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTK-MPGHMG 242
+RG G+ + G G+P + GV PG G GE +PG PG G
Sbjct: 1325 ERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDG--YPGAPGAPGSNG 1375
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = -1
Query: 415 IRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV----WPGTK-MPG 251
IR G G+ G G P G +PG G GGEK +PG K PG
Sbjct: 1159 IRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPG 1218
Query: 250 HMG 242
+ G
Sbjct: 1219 YPG 1221
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = -1
Query: 415 IRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV----WPGTK-MPG 251
IR G G+ G G P G +PG G GGEK +PG K PG
Sbjct: 1160 IRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPG 1219
Query: 250 HMG 242
+ G
Sbjct: 1220 YPG 1222
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Frame = -1
Query: 415 IRSKTMDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARV----WPGTK-MPG 251
IR G G+ G G P G +PG G GGEK +PG K PG
Sbjct: 1196 IRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPG 1255
Query: 250 HMG 242
+ G
Sbjct: 1256 YPG 1258
>U20861-13|ABD63242.1| 112|Caenorhabditis elegans Hypothetical
protein C28H8.11c protein.
Length = 112
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 24 EWCLQNTLLVHRFIKG*VGKGGAVLFLFNGSTVSNR 131
+W + LLV R + G GG+ +++ STVS+R
Sbjct: 31 KWRYNHVLLVQRMLGAKQGTGGSSGYMYLRSTVSDR 66
>U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical
protein C28H8.11a protein.
Length = 403
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 24 EWCLQNTLLVHRFIKG*VGKGGAVLFLFNGSTVSNR 131
+W + LLV R + G GG+ +++ STVS+R
Sbjct: 322 KWRYNHVLLVQRMLGAKQGTGGSSGYMYLRSTVSDR 357
>AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle collagen
LON-3 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -1
Query: 427 DCIDIRSKTMDRGF---QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKM 257
DC D+ + F QG+ G +G P G+ +PG G G+ PG M
Sbjct: 152 DCPDVEQQPSQGCFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQ-----PG--M 204
Query: 256 PGHMG 242
PG MG
Sbjct: 205 PGEMG 209
>AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle collagen
protein LON-3 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -1
Query: 427 DCIDIRSKTMDRGF---QGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKARVWPGTKM 257
DC D+ + F QG+ G +G P G+ +PG G G+ PG M
Sbjct: 152 DCPDVEQQPSQGCFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQ-----PG--M 204
Query: 256 PGHMG 242
PG MG
Sbjct: 205 PGEMG 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,544
Number of Sequences: 27780
Number of extensions: 396003
Number of successful extensions: 1331
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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