Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a15
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0631 - 18190195-18190686,18190866-18191066 69 2e-12
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 62 1e-10
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 62 2e-10
04_01_0630 - 8354628-8355803,8355837-8355926 57 6e-09
09_02_0336 - 7397745-7398308,7398813-7400723 40 0.001
07_03_0346 - 17010472-17010843 36 0.016
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473... 29 1.1
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 27 4.3
01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873... 27 4.3
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 68.5 bits (160), Expect = 2e-12
Identities = 29/70 (41%), Positives = 48/70 (68%)
Frame = +2
Query: 32 LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYIAAAECCKEL 211
L G+ DSD+AG R+ST+G ++ ++WS +KQ+ +ALS+ EAEY+AA CC +L
Sbjct: 73 LLGYSDSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGSCCAQL 132
Query: 212 LYIRDLSKLY 241
L+++ K++
Sbjct: 133 LWMKQTLKVF 142
>02_05_0338 - 28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 62.5 bits (145), Expect = 1e-10
Identities = 28/76 (36%), Positives = 46/76 (60%)
Frame = +2
Query: 2 GIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEY 181
G+HY+ +L G+ DS++ D D ++TSG+V + GG ++W S KQ+++ S+ EAE
Sbjct: 861 GLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAEL 920
Query: 182 IAAAECCKELLYIRDL 229
A E ++RDL
Sbjct: 921 TALDTATVEAEWLRDL 936
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 61.7 bits (143), Expect = 2e-10
Identities = 27/76 (35%), Positives = 45/76 (59%)
Frame = +2
Query: 2 GIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEY 181
GIHY+ +L G+ DS++ D D ++TSG+ + GG ++W S KQ+++ S+ EAE
Sbjct: 817 GIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKSCKQTILTRSTMEAEL 876
Query: 182 IAAAECCKELLYIRDL 229
A E ++R+L
Sbjct: 877 TALDTATVEAEWLREL 892
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 56.8 bits (131), Expect = 6e-09
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 GIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAE 178
G+ + K + L G+ D+ + DP RS +GFV G I+W S KQ++VA S+ +E
Sbjct: 236 GLFFKKNQGSTLIGYTDAGYLSDPHNARSQTGFVFLQGGTAISWKSSKQTLVATSTNHSE 295
Query: 179 YIAAAECCKELLYIR 223
IA E +E +++R
Sbjct: 296 IIALYEASRECVWLR 310
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 IHYSKGDNI-LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRK 142
+ Y + +++ + G+ DSDFA D +STSG+V + GG I+W S K
Sbjct: 780 LSYRRSESLQIVGYSDSDFA--KDNTKSTSGYVFTLAGGAISWKSSK 824
>07_03_0346 - 17010472-17010843
Length = 123
Score = 35.5 bits (78), Expect = 0.016
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 GIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGF 97
G+H G L + D+D+AG PD+RRSTSG+
Sbjct: 84 GLHIGTGPVKSLTAYSDADWAGCPDSRRSTSGY 116
>01_01_0628 -
4731052-4731601,4731825-4732782,4733143-4733953,
4734038-4734241,4734695-4734802,4735930-4736369,
4736463-4736541
Length = 1049
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 393 SVFCQFCARIKQYVINQFSQRKQLLYAIIIVKITTKCFNVHESSKVFYFSVYNLERSLIY 214
S C IK+ + + + K LL+ I+K+ + + + FY+ N++ SL
Sbjct: 533 SASCNLYDSIKELIESGEIEMKLLLFPSAIIKLVNELKTDCDLHENFYWVETNVDSSLAD 592
Query: 213 SSSLQHSAAAI 181
SS L S A I
Sbjct: 593 SSELHGSQAKI 603
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 11 YSKGDNILRGFCDSDFAGDPDTRRSTSGFVIW 106
+ + D L G+ DSDFA + D RRS + V++
Sbjct: 375 FGRTDKGLVGYVDSDFAANLDKRRSFTVKVLY 406
>01_06_0227 -
27686525-27686607,27686731-27686803,27687027-27687315,
27687755-27687832,27687869-27687992,27688796-27688940,
27689046-27689166,27689386-27689542,27690704-27690840,
27691863-27692122,27692199-27692387,27692572-27692775,
27693390-27693436,27694435-27694462
Length = 644
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 47 DSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYIA 187
D + A D TSG V+ N GP + Q ++L S+ EY A
Sbjct: 371 DQNNASDCPNNDDTSGGVVATNNGPRNRNGSTQKAMSLPSSPHEYRA 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,329,262
Number of Sequences: 37544
Number of extensions: 163003
Number of successful extensions: 435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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