Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15a15
         (407 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    85   7e-19
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   0.61 
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          25   0.80 
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   3.2  
EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       23   3.2  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   3.2  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   5.7  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 85.4 bits (202), Expect = 7e-19
 Identities = 39/71 (54%), Positives = 52/71 (73%)
 Frame = +2

Query: 23  DNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYIAAAECC 202
           D  L  + D+D+AGD   R+S SGF+  + GGPI+WS+RKQ  V LSSTEAEY+A AE C
Sbjct: 781 DGQLEAYVDADWAGDHQDRKSNSGFIFHL-GGPISWSARKQQCVTLSSTEAEYVALAEAC 839

Query: 203 KELLYIRDLSK 235
           +ELL+++ L K
Sbjct: 840 RELLWLQKLMK 850


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 0.61
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 390 VFCQFCARIKQYVINQFSQRKQLL 319
           V+ +FCARI    I QF +R+ +L
Sbjct: 788 VYAEFCARIGVANIRQFEERELVL 811


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 0.80
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 270 ESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESATTDCFLELHAIGP 115
           +S  + + +VY L R      S      A Y    + S  T C++ELH  GP
Sbjct: 435 QSVSMGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTS--TPCWIELHLNGP 484


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 191 QQQYTQLQCSKVPQLIVFLSSMQLVHHSSRSQNQKYFVSCQDHQRNQNHK 42
           QQQ  Q    + PQ+       QL     + Q Q+Y V+    Q+ Q H+
Sbjct: 330 QQQQQQTGRYQPPQM-----RQQLQQQQQQRQPQRYVVAGSSQQQQQQHQ 374


>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = -3

Query: 276 VHESSKVFYFSVYNLERSLIYSSSLQHSAAAIYSASVLESATTDCFLELHAIGPPFIQIT 97
           V +    F F  Y +    ++ S+       IY + +++ A  +  L      PPF  +T
Sbjct: 429 VPDHQLTFGFYNYPVSFESMFESNRYEHYMNIYGSVMMQGAINNISLAY----PPFSLLT 484

Query: 96  KPEVLR 79
           +PE +R
Sbjct: 485 QPEKIR 490


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 53  DFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYI 184
           D A  P TRR ++G       GP  W+     V+A+   E   I
Sbjct: 621 DTADGPVTRRVSAGVTQGSILGPTLWNIMYDGVLAVELPEGASI 664


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 110 NGGPIAWSSRKQSVVALSSTEAEYIAAA 193
           N GP +W S   SV   SS  A  ++A+
Sbjct: 219 NSGPSSWMSGAGSVGGPSSAAAAMLSAS 246


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,389
Number of Sequences: 2352
Number of extensions: 6861
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32922351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)