Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a15
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 28 3.0
M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein ( C.ele... 28 3.0
U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical pr... 27 5.2
U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z72505-4|CAA96611.1| 347|Caenorhabditis elegans Hypothetical pr... 27 6.9
U39849-4|AAA81047.1| 349|Caenorhabditis elegans Hypothetical pr... 27 6.9
U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical p... 26 9.1
U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical p... 26 9.1
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
protein M79.1c protein.
Length = 1209
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 177 SASVLESATTDCFLELHAIGPPFI----QITKPEVLRLVSGSPAKSESQK 40
S S +TT A GPPF Q TKP++L+ V S A+ S++
Sbjct: 624 SVSFFNPSTTSKVTSFRAQGPPFPPPPQQNTKPKLLKSVLNSNARHASEE 673
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
protein M79.1b protein.
Length = 1214
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 177 SASVLESATTDCFLELHAIGPPFI----QITKPEVLRLVSGSPAKSESQK 40
S S +TT A GPPF Q TKP++L+ V S A+ S++
Sbjct: 629 SVSFFNPSTTSKVTSFRAQGPPFPPPPQQNTKPKLLKSVLNSNARHASEE 678
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
protein M79.1a protein.
Length = 1224
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 177 SASVLESATTDCFLELHAIGPPFI----QITKPEVLRLVSGSPAKSESQK 40
S S +TT A GPPF Q TKP++L+ V S A+ S++
Sbjct: 639 SVSFFNPSTTSKVTSFRAQGPPFPPPPQQNTKPKLLKSVLNSNARHASEE 688
>M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein (
C.elegans DNA homologousto the v-abl oncogene. ).
Length = 552
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 177 SASVLESATTDCFLELHAIGPPFI----QITKPEVLRLVSGSPAKSESQK 40
S S +TT A GPPF Q TKP++L+ V S A+ S++
Sbjct: 490 SVSFFNPSTTSKVTSFRAQGPPFPPPPQQNTKPKLLKSVLNSNARHASEE 539
>U28737-8|ABA61869.1| 537|Caenorhabditis elegans Hypothetical
protein F14B8.5a protein.
Length = 537
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 104 RSQNQKYFVSCQDHQRNQNHK 42
++QNQ + ++ Q+HQ NQNH+
Sbjct: 472 QTQNQNHLIN-QNHQTNQNHQ 491
>U28737-7|ABA61870.1| 501|Caenorhabditis elegans Hypothetical
protein F14B8.5b protein.
Length = 501
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 104 RSQNQKYFVSCQDHQRNQNHK 42
++QNQ + ++ Q+HQ NQNH+
Sbjct: 436 QTQNQNHLIN-QNHQTNQNHQ 455
>Z72505-4|CAA96611.1| 347|Caenorhabditis elegans Hypothetical
protein C50C10.6 protein.
Length = 347
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 339 SQRKQLLYAIIIVKITTKCFNVHESSKVFYFSVYNLERSLIY 214
S +KQL YA+++ S F F + N+E +L Y
Sbjct: 245 SLQKQLFYALVVQSAIPSVLMYFPISMAFIFPMLNIELNLKY 286
>U39849-4|AAA81047.1| 349|Caenorhabditis elegans Hypothetical
protein C06A8.6 protein.
Length = 349
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 247 EVENFRTFMNIKTFSCYFHYDYSVK*LFSLTKLVNNVLFYPSTKLTK 387
+VEN + +N+++ F+ ++ L LTKL LF+ K+TK
Sbjct: 90 KVENLDSLVNLESLDLSFNRITKIENLEKLTKL--KTLFFVHNKITK 134
>U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical
protein R12C12.1b protein.
Length = 444
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 110 SSRSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNE 6
S++ N K V DH N N+K+L+ Y N+
Sbjct: 99 SAQMANMKVVVVDSDHHGNINYKDLAAKAEKYSNQ 133
>U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical
protein R12C12.1a protein.
Length = 979
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 110 SSRSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNE 6
S++ N K V DH N N+K+L+ Y N+
Sbjct: 634 SAQMANMKVVVVDSDHHGNINYKDLAAKAEKYSNQ 668
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,665,220
Number of Sequences: 27780
Number of extensions: 158738
Number of successful extensions: 578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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