Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a15
(407 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 0.25
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 23 1.0
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 22 3.1
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 22 3.1
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 4.1
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 4.1
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 4.1
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 21 5.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 20 9.4
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 20 9.4
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 25.4 bits (53), Expect = 0.25
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Frame = -1
Query: 179 TQLQCSKVPQLIVFLSSMQLVHH----SSRSQNQK---YFVSCQDHQ 60
TQLQ S + Q ++L Q HH S + NQ+ YF S +DHQ
Sbjct: 86 TQLQ-SFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQ 131
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 23.4 bits (48), Expect = 1.0
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 378 FCARIKQYVINQFSQRKQLLYAIIIVKITTKCFNVH-ESSKVFYFSVYNLERSLIYSSSL 202
+C R Y N S QLL V +T C ++ KV + + + L+ S+
Sbjct: 11 YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPC 70
Query: 201 QH 196
+H
Sbjct: 71 KH 72
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.8 bits (44), Expect = 3.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 38 LSIYCHLYC 12
L IYC LYC
Sbjct: 209 LGIYCRLYC 217
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 21.8 bits (44), Expect = 3.1
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +2
Query: 5 IHYSKGDNILRGFCDSDFAGDPD-TRRSTSGFVIWMNGG--PIAWSSRKQSVV--ALSST 169
I Y+ DN + S FA DP T + +G + G +A S Q++ ALSS
Sbjct: 212 IIYNNSDNSFQRLTSSTFASDPRYTTFTINGESFTLQSGIFGMALSPLTQNLYYSALSSH 271
Query: 170 EAEYIAAAECCK 205
Y+ + K
Sbjct: 272 NLNYVNTEQFVK 283
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 104 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 3
+S+ K +S + N N+ N Y LYCN Y
Sbjct: 75 KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 104 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 3
+S+ K +S + N N+ N Y LYCN Y
Sbjct: 75 KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 104 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 3
+S+ K +S + N N+ N Y LYCN Y
Sbjct: 75 KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 21.0 bits (42), Expect = 5.4
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = -3
Query: 204 LQHSAAAIYSASVLESATTDCFLELHAIGPPFIQITKPEVLR 79
L + A + + E + + L+A PF+ + PE+++
Sbjct: 51 LVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIK 92
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 9.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 147 DCFLELHAIGPPFIQI 100
+C+ E +GP F QI
Sbjct: 112 NCYYETWVLGPLFCQI 127
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 20.2 bits (40), Expect = 9.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 147 DCFLELHAIGPPFIQI 100
+C+ E +GP F QI
Sbjct: 78 NCYYETWVLGPLFCQI 93
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,185
Number of Sequences: 438
Number of extensions: 2058
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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