Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a12
(772 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U16996-1|AAB06261.1| 384|Homo sapiens protein tyrosine phosphat... 31 4.6
U15932-1|AAA64693.2| 383|Homo sapiens protein phosphatase protein. 31 4.6
BC071858-1|AAH71858.1| 695|Homo sapiens IQ motif containing E p... 31 4.6
BC062545-1|AAH62545.1| 384|Homo sapiens dual specificity phosph... 31 4.6
AL355512-2|CAI15120.1| 384|Homo sapiens dual specificity phosph... 31 4.6
AB209823-1|BAD93060.1| 451|Homo sapiens dual specificity phosph... 31 4.6
BC061518-1|AAH61518.1| 452|Homo sapiens IQCE protein protein. 30 8.0
BC043150-1|AAH43150.1| 630|Homo sapiens IQCE protein protein. 30 8.0
AL136792-1|CAB66726.1| 644|Homo sapiens hypothetical protein pr... 30 8.0
AB028946-1|BAA82975.2| 666|Homo sapiens KIAA1023 protein protein. 30 8.0
>U16996-1|AAB06261.1| 384|Homo sapiens protein tyrosine phosphatase
protein.
Length = 384
Score = 31.1 bits (67), Expect = 4.6
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 243 CDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHT 64
C++ + R T C ++ +K K F FDY+K+ +S++ S +F + L Y L T
Sbjct: 263 CEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMV-SPNFGFMGQLLQYESEILPST 321
>U15932-1|AAA64693.2| 383|Homo sapiens protein phosphatase protein.
Length = 383
Score = 31.1 bits (67), Expect = 4.6
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 243 CDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHT 64
C++ + R T C ++ +K K F FDY+K+ +S++ S +F + L Y L T
Sbjct: 262 CEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMV-SPNFGFMGQLLQYESEILPST 320
>BC071858-1|AAH71858.1| 695|Homo sapiens IQ motif containing E
protein.
Length = 695
Score = 31.1 bits (67), Expect = 4.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 240 DSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKS 124
D +++ T+ K+ NL+ TY++ V RLQ+LL S
Sbjct: 230 DGTIRKLQTDMKTTNLEEMRIAMETYYEEVHRLQTLLAS 268
>BC062545-1|AAH62545.1| 384|Homo sapiens dual specificity
phosphatase 5 protein.
Length = 384
Score = 31.1 bits (67), Expect = 4.6
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 243 CDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHT 64
C++ + R T C ++ +K K F FDY+K+ +S++ S +F + L Y L T
Sbjct: 263 CEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMV-SPNFGFMGQLLQYESEILPST 321
>AL355512-2|CAI15120.1| 384|Homo sapiens dual specificity
phosphatase 5 protein.
Length = 384
Score = 31.1 bits (67), Expect = 4.6
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 243 CDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHT 64
C++ + R T C ++ +K K F FDY+K+ +S++ S +F + L Y L T
Sbjct: 263 CEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMV-SPNFGFMGQLLQYESEILPST 321
>AB209823-1|BAD93060.1| 451|Homo sapiens dual specificity
phosphatase 5 variant protein.
Length = 451
Score = 31.1 bits (67), Expect = 4.6
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 243 CDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHT 64
C++ + R T C ++ +K K F FDY+K+ +S++ S +F + L Y L T
Sbjct: 330 CEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMV-SPNFGFMGQLLQYESEILPST 388
>BC061518-1|AAH61518.1| 452|Homo sapiens IQCE protein protein.
Length = 452
Score = 30.3 bits (65), Expect = 8.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 240 DSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKS 124
D + + T+ K+ NL+ TY++ V RLQ+LL S
Sbjct: 214 DGTISKLQTDMKTTNLEEMRIAMETYYEEVHRLQTLLAS 252
>BC043150-1|AAH43150.1| 630|Homo sapiens IQCE protein protein.
Length = 630
Score = 30.3 bits (65), Expect = 8.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 240 DSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKS 124
D + + T+ K+ NL+ TY++ V RLQ+LL S
Sbjct: 165 DGTISKLQTDMKTTNLEEMRIAMETYYEEVHRLQTLLAS 203
>AL136792-1|CAB66726.1| 644|Homo sapiens hypothetical protein
protein.
Length = 644
Score = 30.3 bits (65), Expect = 8.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 240 DSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKS 124
D + + T+ K+ NL+ TY++ V RLQ+LL S
Sbjct: 179 DGTISKLQTDMKTTNLEEMRIAMETYYEEVHRLQTLLAS 217
>AB028946-1|BAA82975.2| 666|Homo sapiens KIAA1023 protein protein.
Length = 666
Score = 30.3 bits (65), Expect = 8.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 240 DSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLKS 124
D + + T+ K+ NL+ TY++ V RLQ+LL S
Sbjct: 201 DGTISKLQTDMKTTNLEEMRIAMETYYEEVHRLQTLLAS 239
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,195,903
Number of Sequences: 237096
Number of extensions: 2373085
Number of successful extensions: 5231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5231
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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