Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15a11
         (773 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   437   e-124
AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         27   0.49 
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   3.4  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   3.4  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   3.4  
DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor...    24   6.0  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   6.0  
AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding pr...    23   7.9  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   7.9  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  437 bits (1077), Expect = e-124
 Identities = 198/233 (84%), Positives = 215/233 (92%)
 Frame = -1

Query: 749 RVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVH 570
           RVIRAQRKGAGSVF +HTKKRKG PKLR LDYAERHGY+KGVVK II DPGRGAPLAVV+
Sbjct: 3   RVIRAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAVVN 62

Query: 569 FRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGD 390
           FRDPY+F+  K+LFIA EG+YTGQFVYCG++A L++GNV+P+G MPEGTIVCNLEEK GD
Sbjct: 63  FRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGD 122

Query: 389 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 210
           RG+LAR SGN+A+VI HNPD KRTRVKLPSGAKKVLPS+NR MVGIVAGGGRIDKPILKA
Sbjct: 123 RGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKA 182

Query: 209 GRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 51
           GRAYHKYKVKRNCWP VRGVAMNPVEHPHGGGNHQHIGKASTVKRGT  GRKV
Sbjct: 183 GRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKV 235


>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 0.49
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 278 SSNRGMVGIVAGGGRIDKPILKAGRAYHK 192
           S+ +  +G V GG   D  IL  GRAYH+
Sbjct: 81  SAGQVPLGAVVGGHTSDGEILYVGRAYHE 109


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 276 KQQRHGRYCCWRWTY 232
           +QQ+HG++CC R ++
Sbjct: 280 QQQQHGQHCCCRGSH 294


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 647 RHGYIKGVVKDIIHDP 600
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 647 RHGYIKGVVKDIIHDP 600
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor 24
           protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 375 CQTTSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLA 503
           C+T SIT  +        LRH      +S ++S +L  ++KLA
Sbjct: 180 CETLSITAKILAEDFQRALRHVGPAAKVSEYRSLWL-RLSKLA 221


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 770 DGS*SWXRVIRAQRKGAGSVFVSHTKKRKGAPKLRS 663
           DG      VI+ Q K + +  +  ++K++GAPK ++
Sbjct: 524 DGQYVVLEVIQLQDKDSKAAGMEKSRKKRGAPKRKA 559


>AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding
           protein AgamOBP50 protein.
          Length = 166

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +3

Query: 483 STINKLACVEPFGSNEELLPCLELVWIAEVYNSQRCTSTRVMDY 614
           S + KL C+ PF  + ++  C +L     +     C  T    Y
Sbjct: 8   SVVGKLTCLSPFLQSIKVASCCQLEAFLTLPTYGNCLQTIAEKY 51


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 140 GSWQHHVHMASSYV*PCTCGMPFQLSK*VCQY 235
           GS  H     SSYV    CG P ++    C++
Sbjct: 504 GSEGHKARDCSSYVKCAACGGPHRIGHMSCEH 535


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,664
Number of Sequences: 2352
Number of extensions: 20186
Number of successful extensions: 43
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)