Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a03
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 31 0.19
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 3.1
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 27 3.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.1
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 5.4
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 25 7.2
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 25 9.5
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 9.5
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 9.5
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 30.7 bits (66), Expect = 0.19
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = -3
Query: 618 SRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSPNSSVELVE 439
S +SV+T + +N S+E TF+ I++IN SLTV+ P SS+
Sbjct: 931 SLTSSVSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTVK-PESSLSSST 989
Query: 438 QIISFQSMYTATASACYKLNVEGHSDSLRAFRVDSDEN-IYVNVGNGVKALFNYPWVMVK 262
S T +S + N E S S + R S + + N V +L +Y + K
Sbjct: 990 TSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPVKTVVSLESYKFTTSK 1049
Query: 261 ENNMVSFMSANEDTTIQFSVIMNSFT 184
+ + + T ++ +V++ + T
Sbjct: 1050 ISLVKNPTKTYTVTDVETNVVVQTHT 1075
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 98 SNVLSFNLKPFPYAKQFDG-EYFKAGSPIEVKEFIITLNCIVVSSLAD 238
SN+ S N+ P YAK F+G + K P + + I+ + VV+ L +
Sbjct: 374 SNIRSNNISPKVYAKDFNGLQAAKVDLPGPINSYTISSDRSVVAILVN 421
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -3
Query: 486 PSLTVRSPNSSVELVEQIISFQSM---YTATASACYKLNVEGHSDSLRAFRVDSDENIYV 316
P+L N+S+E+ + + T AS + + GH +R + ++ ++ +
Sbjct: 353 PTLVTSLQNNSIEVYALDVKSEGSAAPLTERASRISAIEIPGHRADVRTLALSANHDVIL 412
Query: 315 NVGNGVKALFN 283
+ NG L+N
Sbjct: 413 SGANGSLKLWN 423
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 83 KINCKSNVLSFNLKPFPYAKQFDGEYFKAG-SPIEV 187
K++CK+ +L+ N P Y K FD + + G +P++V
Sbjct: 143 KLSCKNLLLAINYSPKTYTKIFD--FLRNGRAPLQV 176
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 378 RLICNRPKPW 407
R+ICNRP PW
Sbjct: 2030 RIICNRPHPW 2039
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 247 HHVIFFDHYPGIIKQGFNAVAHVYIN 324
HHV+ + +YP +++ A Y+N
Sbjct: 175 HHVMLYQYYPKSLQEALWAAVEHYVN 200
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 229 VGRHERHHVIFFDHYPGIIKQGFNAVAHVYINVFVGINSK 348
VG E + Y +I G V+++Y+ + + INSK
Sbjct: 314 VGTSEANQSALMQLYAALISLGRKIVSYIYVKLDLIINSK 353
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 172 FADRGKRIHYNAKLYSSVFVG 234
FAD+ +++Y+ K++ S F G
Sbjct: 109 FADKPNQLYYDGKVFVSTFAG 129
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 157 VFQSWFADRGKRIHYNAKLYSSVFVGRHERHH 252
+ SW + +HYN KLY+ + H HH
Sbjct: 140 IIDSWQYFWHRYLHYNKKLYNMI----HAHHH 167
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 224 SSLADMKDTMLFSLTITQ 277
+S+AD+ DT ++SLT TQ
Sbjct: 390 TSVADLLDTAVYSLTTTQ 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,102
Number of Sequences: 5004
Number of extensions: 53883
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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