Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a03
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490... 30 1.4
02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504 30 1.4
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 30 1.8
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 29 3.2
03_05_0316 - 23045214-23045261,23045322-23045400,23045548-230457... 29 3.2
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 29 4.2
>07_01_0654 -
4900509-4900518,4900626-4900709,4900844-4901377,
4901462-4901619,4901703-4901832,4901918-4901999,
4902097-4902230,4902314-4902410,4902512-4902788,
4902881-4903024
Length = 549
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -3
Query: 378 VEGHSDSLRAFRVDSDENIYVNVGNGVKALFNYPWVMVKE 259
VEGH+ LR FRV S + +N A+F PW +V+E
Sbjct: 69 VEGHAYFLRNFRV-SRQTKKLNAVPSTYAIFFTPWTIVEE 107
>02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504
Length = 485
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 199 YNAKLYSSVFVGRHERHHVIFFDHYPGIIKQGFNAVAHVYIN 324
YN +L S + ++ R+H + D Y + KQG++A+ Y++
Sbjct: 420 YNVQLEESSLIDQYPRNHQVLTDPY-AVHKQGWDALKTAYLD 460
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 648 NNTNGRVIVLSRDTSVNTNDLSFEAQRINNNNSSE 544
N+ R++ SRD ++N+ F+ RI+ NN E
Sbjct: 34 NDKRERLVKASRDLTMNSKKAIFQVHRISKNNKEE 68
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = -3
Query: 378 VEGHSDSLRAFRVDSDENIYVNVGNGVKALFNYPWVMVKENNMVSFMSANEDTTI 214
++ H +AF D E+ Y++ + + + F W+++K+ + F N T +
Sbjct: 1073 LDSHMKLAKAFEWDITEDEYLHFSSVLNSHFRSRWLVIKKKHSDEFTRNNNGTNV 1127
>03_05_0316 -
23045214-23045261,23045322-23045400,23045548-23045707,
23046937-23047006,23047439-23048017
Length = 311
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 564 NNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSPN-SSVELVEQII 430
+NN GT F V +R+P+TN+ T P+ S V ++E ++
Sbjct: 266 DNNYRISGTEFRAVTTYRLPLTNLWDTQQTKELPSLSGVLVLEHLV 311
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -3
Query: 603 VNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSPNS 457
+ N+ + R + +N + T N V ++ VPSL + PNS
Sbjct: 4611 IQPNNAEMDYNRESESNLANSTDMNSAAAPSVNFSSNEVPSLEISMPNS 4659
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,297
Number of Sequences: 37544
Number of extensions: 323652
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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