Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15a03
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    26   1.2  
AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    23   6.3  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   6.3  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   6.3  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 235 RHERHHVIFFDHYPGIIKQGFNAVAHVYINVFVGINSKSSQGIRMTL 375
           + +R  ++F   +P  I++      H YI VFVGI   +   +  T+
Sbjct: 356 KQQRQTLMFSATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTI 402


>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 128 FPYAKQFDGEYFKAGSPIEVKEFIITLNCIVVSSLADMKD 247
           FP ++ F+   F+ G+    KE++  +    +++L D++D
Sbjct: 25  FPSSRPFNKTGFEFGAWEPNKEYVYNVTTKTMTALPDLED 64


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 128 FPYAKQFDGEYFKAGSPIEVKEFIITLNCIVVSSLADMKD 247
           FP ++ F+   F+ G+    KE++  +    +++L D++D
Sbjct: 25  FPSSRPFNKTGFEFGAWEPNKEYVYNVTTKTMTALPDLED 64


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 384 LNVEGHSDSLRAFRVDSDENIYVNVGNG 301
           +N  G SDS  A R +S E  Y+  G+G
Sbjct: 170 VNSMGMSDSWEALRGNSVEFSYITSGSG 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,183
Number of Sequences: 2352
Number of extensions: 15050
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)