Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a03
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 29 2.2
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 2.2
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 29 2.2
Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical... 29 3.8
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 5.0
Z81113-4|CAB03281.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 27 8.7
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 360 SLRAFRVDSDENIYVNVGNGVKALFNYPWVMVKENNMVSFMSANEDTTIQFSVIMNSFTS 181
SLR +D +N + V +NY + K+ M +F+SA D + +++ +N
Sbjct: 359 SLRRSDLDEYKNFELRVKERADQKYNYTNITGKDYEMNNFISAFYDAVLLYAIALNETIQ 418
Query: 180 IG 175
G
Sbjct: 419 SG 420
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 360 SLRAFRVDSDENIYVNVGNGVKALFNYPWVMVKENNMVSFMSANEDTTIQFSVIMNSFTS 181
SLR +D +N + V +NY + K+ M +F+SA D + +++ +N
Sbjct: 312 SLRRSDLDEYKNFELRVKERADQKYNYTNITGKDYEMNNFISAFYDAVLLYAIALNETIQ 371
Query: 180 IG 175
G
Sbjct: 372 SG 373
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 360 SLRAFRVDSDENIYVNVGNGVKALFNYPWVMVKENNMVSFMSANEDTTIQFSVIMNSFTS 181
SLR +D +N + V +NY + K+ M +F+SA D + +++ +N
Sbjct: 359 SLRRSDLDEYKNFELRVKERADQKYNYTNITGKDYEMNNFISAFYDAVLLYAIALNETIQ 418
Query: 180 IG 175
G
Sbjct: 419 SG 420
>Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical
protein F19H8.4 protein.
Length = 749
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 178 DRGKRIHYNAKLYSSVFVGRHERHHVIFFD--HYPGIIKQGFNAVAHV 315
+ G R+ YN ++Y V + H + FFD PGI++ F+ ++ +
Sbjct: 349 ESGARV-YNERMYDLVLDIPQKNHDLAFFDKQKMPGIVRHAFDLMSTI 395
>Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical
protein R06A4.4b protein.
Length = 419
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3
Query: 273 VMVKENNMVSFMSANEDTTIQFSVIMNSFTSIGEPALKYSPS 148
V+ + +N + F++ N D + + SV N+ ++GE ALK P+
Sbjct: 230 VLPQSSNFIFFLAQNLDPS-KISVCNNAIWALGELALKMGPA 270
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3
Query: 273 VMVKENNMVSFMSANEDTTIQFSVIMNSFTSIGEPALKYSPS 148
V+ + +N + F++ N D + + SV N+ ++GE ALK P+
Sbjct: 694 VLPQSSNFIFFLAQNLDPS-KISVCNNAIWALGELALKMGPA 734
>AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical
protein Y111B2A.5a protein.
Length = 434
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 477 TVRSPNSSV-ELVEQIISFQSMYTATASACYKLNVEGHSDSLRAFRVDSDE 328
T NSS+ +L EQ+ S ++ AS K + +SD LRA ++++++
Sbjct: 372 TAELQNSSISQLTEQLESVKAENARLASEIEKSGLSENSDELRALQLENEQ 422
>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
protein C05D12.3c protein.
Length = 1001
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 507 PITNIN-VPSLTVRSPNSSVELVEQIISFQSMYTATASACYKL 382
P+TNIN + + SPN + ++EQ +++YT A+ K+
Sbjct: 520 PVTNINAINDPRLESPNQFIFILEQHSGNKNIYTTLAAEIEKI 562
>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
protein C05D12.3a protein.
Length = 1039
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 507 PITNIN-VPSLTVRSPNSSVELVEQIISFQSMYTATASACYKL 382
P+TNIN + + SPN + ++EQ +++YT A+ K+
Sbjct: 520 PVTNINAINDPRLESPNQFIFILEQHSGNKNIYTTLAAEIEKI 562
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -3
Query: 537 TFNGVVCHRVPITNINVPSLTVRSPNSSVELVEQIISFQSMYTATASA-CYKLNVEGHSD 361
T N ++C R + + L P+ V + + M+ T S C+ L+
Sbjct: 2154 TINAIICQRKDASRGRLRFLKDNEPHDGYMYVIAVETGYRMFATTDSTICFNLSGNEGDQ 2213
Query: 360 SLRAFRVDSDEN 325
R+FR + D N
Sbjct: 2214 IFRSFRSEEDGN 2225
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -3
Query: 537 TFNGVVCHRVPITNINVPSLTVRSPNSSVELVEQIISFQSMYTATASA-CYKLNVEGHSD 361
T N ++C R + + L P+ V + + M+ T S C+ L+
Sbjct: 2154 TINAIICQRKDASRGRLRFLKDNEPHDGYMYVIAVETGYRMFATTDSTICFNLSGNEGDQ 2213
Query: 360 SLRAFRVDSDEN 325
R+FR + D N
Sbjct: 2214 IFRSFRSEEDGN 2225
>Z81113-4|CAB03281.2| 388|Caenorhabditis elegans Hypothetical
protein T03F6.4 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 579 EAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSP 463
E+QRI +N ++ TF VC RV I ++ + S T+ P
Sbjct: 163 ESQRIEDNFFADCLTFFDKVCGRVEIKSLLLCSKTILFP 201
>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
protein Y66H1B.3 protein.
Length = 1084
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/114 (22%), Positives = 49/114 (42%)
Frame = -3
Query: 429 SFQSMYTATASACYKLNVEGHSDSLRAFRVDSDENIYVNVGNGVKALFNYPWVMVKENNM 250
SF YTA Y+LNV + + ++ N+ V+ G V+ L N + E +
Sbjct: 795 SFTVKYTAQRPGAYQLNVVFAGEEISPIEINVKPNVDVS-GIRVEGLENAVVTVNVEKEI 853
Query: 249 VSFMSANEDTTIQFSVIMNSFTSIGEPALKYSPSNCFAYGNGFKLNDSTFDLQF 88
F + E+T I VI + + E ++ +P+ ++ + T D+ +
Sbjct: 854 HVFTTDGENTRI---VITSPSGRVVEAIIESTPTGFRVRFTPSEVGNYTIDVTY 904
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,345
Number of Sequences: 27780
Number of extensions: 302184
Number of successful extensions: 751
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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