Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15a03
(650 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.63
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 1.9
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 1.9
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 1.9
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 1.9
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 23 1.9
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 4.5
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 4.5
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 4.5
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.9
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 21 7.8
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 7.8
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 25.0 bits (52), Expect = 0.63
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -3
Query: 621 LSRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSP 463
LS T N N+ + N NN++ +N C ++ IN+ + V P
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNN-NCKKLYYNIINIEQIPVPVP 369
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 554 THRKAPRLTVWFAIAFLSQTLTC 486
T RK+P LT A +QT+TC
Sbjct: 224 TLRKSPSLTSLNAYLIKNQTITC 246
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 554 THRKAPRLTVWFAIAFLSQTLTC 486
T RK+P LT A +QT+TC
Sbjct: 224 TLRKSPSLTSLNAYLIKNQTITC 246
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 554 THRKAPRLTVWFAIAFLSQTLTC 486
T RK+P LT A +QT+TC
Sbjct: 275 TLRKSPSLTSLNAYLIKNQTITC 297
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 554 THRKAPRLTVWFAIAFLSQTLTC 486
T RK+P LT A +QT+TC
Sbjct: 224 TLRKSPSLTSLNAYLIKNQTITC 246
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 23.4 bits (48), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 606 SVNTNDLSFEAQRINNNNSSEGTTFNG 526
+ NTN + NNNN++ G NG
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNG 258
Score = 22.2 bits (45), Expect = 4.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = -3
Query: 618 SRDTSVNTNDLSFEAQRINNNNSSEGTTFNG 526
S ++++ + + A NNNN++ NG
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNNNNNNG 253
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/41 (21%), Positives = 20/41 (48%)
Frame = -3
Query: 648 NNTNGRVIVLSRDTSVNTNDLSFEAQRINNNNSSEGTTFNG 526
N+ N + + +T+ + N+ + NNN +++ NG
Sbjct: 222 NSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNG 262
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 4.5
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -3
Query: 621 LSRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPI-TNINVPSLTVRSPNSSVEL 445
LS T N N+ + N NN+ + +N ++PI + + R + +
Sbjct: 85 LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWISM 144
Query: 444 VEQIISFQ 421
EQI F+
Sbjct: 145 QEQIPRFR 152
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 4.5
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -3
Query: 621 LSRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPI-TNINVPSLTVRSPNSSVEL 445
LS T N N+ + N NN+ + +N ++PI + + R + +
Sbjct: 85 LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWISM 144
Query: 444 VEQIISFQ 421
EQI F+
Sbjct: 145 QEQIPRFR 152
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 4.5
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -3
Query: 621 LSRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPI-TNINVPSLTVRSPNSSVEL 445
LS T N N+ + N NN+ + +N ++PI + + R + +
Sbjct: 85 LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWISM 144
Query: 444 VEQIISFQ 421
EQI F+
Sbjct: 145 QEQIPRFR 152
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 5.9
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = -3
Query: 621 LSRDTSVNTNDLSFEAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSPNSS---- 454
LS T N N+ + N NN+ + +N ++P+ + VP P+
Sbjct: 85 LSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPVP-VPVPIYCGNFPSRPMGPW 143
Query: 453 VELVEQIISFQSMYTAT 403
V + EQI F+ + +T
Sbjct: 144 VPMQEQIPRFRHIGPST 160
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 160 FQSWFADRGKRIHY 201
F FADRG +++Y
Sbjct: 463 FAQLFADRGMKVYY 476
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 160 FQSWFADRGKRIHY 201
F FADRG +++Y
Sbjct: 463 FAQLFADRGMKVYY 476
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,223
Number of Sequences: 438
Number of extensions: 4044
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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