Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p23
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...   113   2e-26
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    50   3e-07
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.7  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.2  

>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score =  113 bits (272), Expect = 2e-26
 Identities = 60/133 (45%), Positives = 85/133 (63%), Gaps = 4/133 (3%)
 Frame = -1

Query: 718 IRNGEIVPVEVTCSLLHKAMQK---SGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVL 548
           I++G+IVP+E+T SLL   M++    G ++FLIDGFPR  D  +G+E+ +       F L
Sbjct: 57  IKDGKIVPMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAK---FAL 113

Query: 547 FFECSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINA 368
           +F C +E   +R + RG   SGRSDDNIES+KKRF TY   +MP++ Y      +  I+A
Sbjct: 114 YFRCGQETMLKRLIHRGKT-SGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDA 172

Query: 367 EEEPDQVF-DKVK 332
           E++PD VF D VK
Sbjct: 173 EQDPDAVFEDTVK 185


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 19/49 (38%), Positives = 34/49 (69%)
 Frame = -1

Query: 481 RSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKV 335
           RSDDN ++L+KR  TY   T P++ +Y K G    ++A ++P+QV++++
Sbjct: 164 RSDDNADALRKRLVTYHEQTTPVVEFYKKKGKWAAVDAAQKPEQVWEQI 212


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 454 KKRFNTYLNDTMPIINYYDKLGLVRRI-NAEEEPDQVFDKVKVAFD 320
           K++FNTYL + + + NY +   L+ R+    + PD V    +   D
Sbjct: 657 KRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVD 702


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 239 NLIQTLCRAIDLIYRL*LQFESFQFNLVKCYFNFVKHLIRFF 364
           N+I+  CR I  I ++ L F SF F+     F +V+   R F
Sbjct: 277 NIIRLACRVIADIPQITLIFISFLFSFYVLIFIWVRLFARLF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,350
Number of Sequences: 5004
Number of extensions: 56038
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)