Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14p23
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259... 113 1e-25
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 105 4e-23
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 104 8e-23
04_01_0026 - 354855-354876,355184-355248,355710-355817,356215-35... 103 1e-22
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56... 63 1e-19
11_03_0227 + 11934530-11934638,11937206-11937351,11937492-119376... 51 8e-07
12_01_0813 + 7475591-7475693,7476972-7477117,7477205-7477324,747... 49 4e-06
03_01_0215 + 1696250-1696573,1697653-1697793,1698267-1698539,169... 38 0.006
04_04_1543 - 34270578-34270718,34271069-34271341,34271782-342719... 35 0.074
07_01_1183 + 11250574-11250781,11250882-11251002,11251208-11251229 30 2.1
03_01_0279 - 2141327-2141437,2141667-2141789,2141869-2142057,214... 30 2.1
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 28 6.4
03_05_0880 - 28450248-28450458,28451911-28452013,28452135-284522... 28 8.5
>07_03_1324 -
25825153-25825197,25825705-25825785,25825907-25825967,
25826005-25826060,25826171-25826239,25826366-25826473,
25826555-25826635,25826795-25826951,25827060-25827177,
25827285-25827339,25827779-25827814
Length = 288
Score = 113 bits (273), Expect = 1e-25
Identities = 58/132 (43%), Positives = 83/132 (62%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFE 539
I+ G+IVP EVT LL AM K+ ++FLIDGFPRN++N +E V K FVLFF+
Sbjct: 77 IKEGKIVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFENV--TKISPAFVLFFD 134
Query: 538 CSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEE 359
CS E R L R GR DDNIE+++KRF ++ ++P+I +Y+ V++I+A +
Sbjct: 135 CSEEEMERRLLGR---NQGRVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKP 191
Query: 358 PDQVFDKVKVAF 323
+VF+ VK F
Sbjct: 192 ISEVFEDVKAIF 203
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 105 bits (252), Expect = 4e-23
Identities = 50/114 (43%), Positives = 76/114 (66%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFE 539
I G+IVP E+T LL +A+ K G ++++IDGFPRN++N +E V+S + FVLFF+
Sbjct: 76 ITEGKIVPSEITIKLLQEAIIKGGNDKYIIDGFPRNEENRVVFESVISISPE--FVLFFD 133
Query: 538 CSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRR 377
CS E R L R GRSDDNIE+++KR ++ ++P+I YY+ G+V++
Sbjct: 134 CSEEEMERRLLGR---NQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKK 184
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 104 bits (249), Expect = 8e-23
Identities = 57/132 (43%), Positives = 81/132 (61%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFE 539
I+ G+IVP E +AM KSG ++FLIDGFPRN++N +E V K FVLFF+
Sbjct: 80 IKEGKIVPSE-------EAMIKSGNDKFLIDGFPRNEENRAAFENVT--KITPAFVLFFD 130
Query: 538 CSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEE 359
CS E R L R GR DDNIE+++KRF ++ ++P+I YY+ V++I+A +
Sbjct: 131 CSEEEMERRLLGRN---QGRVDDNIETIRKRFKVFVESSLPVIEYYNAKDKVKKIDAAKP 187
Query: 358 PDQVFDKVKVAF 323
+VF+ VK F
Sbjct: 188 IPEVFEDVKAIF 199
>04_01_0026 -
354855-354876,355184-355248,355710-355817,356215-356295,
356729-356885,356990-357107,357485-357533,357806-357901
Length = 231
Score = 103 bits (248), Expect = 1e-22
Identities = 52/135 (38%), Positives = 80/135 (59%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFE 539
I+ G+IVP E+T L+ KAM+ S +R LIDGFPR ++N +ER+ + L V+FF+
Sbjct: 95 IKEGKIVPSEITVELIRKAMESSDAKRVLIDGFPRCEENRIAFERITGTEPDL--VIFFD 152
Query: 538 CSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEE 359
C + +R L R GR DDNIE++KKR + + +P+++YY G V +INA
Sbjct: 153 CPEDEMVKRLLGR---NQGRVDDNIETIKKRLKVFESLNIPVVDYYTSRGKVHKINATGT 209
Query: 358 PDQVFDKVKVAFDEI 314
+++F V F +
Sbjct: 210 EEEIFGAVHKLFSSL 224
>06_01_0067 +
561910-561987,562698-562759,564293-564338,564701-564758,
564892-565009,565130-565286,565611-565718,565884-565955,
566058-566174,566309-566404
Length = 303
Score = 62.9 bits (146), Expect(2) = 1e-19
Identities = 22/57 (38%), Positives = 41/57 (71%)
Frame = -1
Query: 484 GRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVKVAFDEI 314
GR DDNI+++++RF+ + T+P+I YY+K G +R+++ + D+VF+ VK F ++
Sbjct: 174 GRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKAIFAQL 230
Score = 51.6 bits (118), Expect(2) = 1e-19
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSD 572
+ G++V ++ LL KAM++SG ++FL+DGFPRN++N +E + D
Sbjct: 128 MNEGKLVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIGRD 176
>11_03_0227 +
11934530-11934638,11937206-11937351,11937492-11937611,
11937731-11937898,11938534-11938623,11938920-11939018
Length = 243
Score = 51.2 bits (117), Expect = 8e-07
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 28/154 (18%)
Frame = -1
Query: 709 GEIVPVEVTCSLLHKAMQK-SGKERFLIDGFPRNQDNMDGWERVMSDK-TKLLFVLFFEC 536
GE+V ++ ++ +AM+K S ++ F++DGFPR + ++ K TK+ VL F
Sbjct: 86 GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLEKKGTKVDKVLNFAI 145
Query: 535 SREICTERCLRRGA-AGSGRS-------------------------DDNIESLKKRFNTY 434
I ER R SGRS DD E LK R +
Sbjct: 146 DDSILEERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAEVLKSRLEAF 205
Query: 433 LNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVK 332
T P+I+YY K LV ++AE+ P +V +V+
Sbjct: 206 HKQTEPVIDYYSKKALVANLHAEKPPKEVTAEVQ 239
>12_01_0813 +
7475591-7475693,7476972-7477117,7477205-7477324,
7477445-7477612,7478252-7478341,7478941-7479039
Length = 241
Score = 48.8 bits (111), Expect = 4e-06
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 28/156 (17%)
Frame = -1
Query: 709 GEIVPVEVTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDK-TKLLFVLFFEC 536
GE+V ++ ++ +AM+K+ ++ F++DGFPR + +++ + TK+ VL F
Sbjct: 84 GELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAI 143
Query: 535 SREICTERCLRRGA-AGSGRS-------------------------DDNIESLKKRFNTY 434
I ER R SGRS DD LK R +
Sbjct: 144 DDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAF 203
Query: 433 LNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVKVA 326
T P+I+YY K G+V ++AE+ P +V +V+ A
Sbjct: 204 HVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKA 239
>03_01_0215 +
1696250-1696573,1697653-1697793,1698267-1698539,
1698755-1698814,1698890-1699033
Length = 313
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKS---GKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVL 548
+ G++V E+ +LL K ++K G+ F++DGFPR + ++ T + V+
Sbjct: 113 VNQGKLVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAE----ILDGVTDIDMVV 168
Query: 547 FFECSREICTERCLRRGAAGSGRSDDNI 464
+ ++ E+CL R G + N+
Sbjct: 169 NLKLREDVLVEKCLGRRICGQCGKNFNL 196
>04_04_1543 -
34270578-34270718,34271069-34271341,34271782-34271922,
34272365-34272667
Length = 285
Score = 34.7 bits (76), Expect = 0.074
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKS---GKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVL 548
+ NG++V E+ +LL K +++ G+ F++DGFPR + ++ T + V+
Sbjct: 106 VNNGKLVSDEIIINLLSKRLEEGAEKGELGFILDGFPRTIRQAE----ILEGVTDIDLVI 161
Query: 547 FFECSREICTERCLRRGAAGSGRSDDNIESL 455
+ E +CL R + N+ S+
Sbjct: 162 NLKLREEALLAKCLGRRMCSQCGGNFNVASI 192
>07_01_1183 + 11250574-11250781,11250882-11251002,11251208-11251229
Length = 116
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -3
Query: 299 QIVTIICILDQLPCKGFVLN 240
QIV I+C+LDQL CK VL+
Sbjct: 72 QIVLILCLLDQLGCKVAVLD 91
>03_01_0279 -
2141327-2141437,2141667-2141789,2141869-2142057,
2142270-2142989,2144857-2144931
Length = 405
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 493 QRRVSSISRYISHANIRRTKRKVAWFCRT*RAPSHP 600
++R ISRYI N R +K+ + CR A S P
Sbjct: 305 EQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRP 340
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 481 RSDDNIESLKKRFNTYLNDTMPIINYYDKL 392
RSDD E +K R +TY ++ +I Y L
Sbjct: 267 RSDDTFEKVKSRLDTYKQNSEAVIPTYSDL 296
>03_05_0880 -
28450248-28450458,28451911-28452013,28452135-28452280,
28452629-28452801,28453267-28453539
Length = 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 460 SLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 365
S++K Y++ + PII+Y D L L R I+ +
Sbjct: 200 SVQKEMRRYIDASSPIIDYIDNLFLSRSISLD 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,382
Number of Sequences: 37544
Number of extensions: 328698
Number of successful extensions: 815
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -