Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14p23
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 149 3e-36
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 143 1e-34
Z50045-3|CAA90364.1| 210|Caenorhabditis elegans Hypothetical pr... 95 6e-20
AF304123-1|AAG50236.1| 210|Caenorhabditis elegans adenylate kin... 95 6e-20
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 64 1e-10
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 64 1e-10
L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical p... 45 6e-05
U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z48585-2|CAA88479.1| 222|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF016673-3|AAB66122.2| 366|Caenorhabditis elegans Hypothetical ... 28 5.8
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 149 bits (360), Expect = 3e-36
Identities = 72/139 (51%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFF 542
I+NG IVPVE+TCSLL AM+ G + FL+DGFPRN+DN+ GW + M K + FVLF
Sbjct: 56 IKNGSIVPVEITCSLLENAMKACGDAKGFLVDGFPRNEDNLQGWNKQMDGKALVQFVLFL 115
Query: 541 ECSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEE 362
C IC ERCL R G GR+DDN ESLKKR TY T PII +++K GLVR + +E
Sbjct: 116 SCPVSICIERCLNR---GQGRTDDNEESLKKRVETYNQQTFPIIEHFEKSGLVREVKSER 172
Query: 361 EPDQVFDKVKVAFDEIKLK 305
D V+ V+ FD K
Sbjct: 173 PVDVVYADVEKVFDAANKK 191
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 143 bits (346), Expect = 1e-34
Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFF 542
I+NG IVPVE+TC+LL AM S FLIDGFPRN+DN GW + M K FVLF
Sbjct: 56 IKNGSIVPVEITCALLENAMIASKDANGFLIDGFPRNEDNWSGWNKQMGGKVNEQFVLFL 115
Query: 541 ECSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEE 362
C ++C +RCL R G GR+DDN+ESLKKR TY T PII +++K+G+VR +N+E
Sbjct: 116 SCPVDVCIDRCLHR---GQGRTDDNVESLKKRVETYNQSTFPIIEHFEKVGMVREVNSER 172
Query: 361 EPDQVFDKVKVAF 323
+V++ V F
Sbjct: 173 PVTEVYEDVVKVF 185
>Z50045-3|CAA90364.1| 210|Caenorhabditis elegans Hypothetical
protein F38B2.4 protein.
Length = 210
Score = 94.7 bits (225), Expect = 6e-20
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKS---GKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVL 548
+ +G +VP+EV L+ +AM K+ G + FLIDG+PR +E + + KL VL
Sbjct: 73 MESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQE-AKL--VL 129
Query: 547 FFECSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINA 368
FF+ + E +R L R A SGR+DDN +++KKR +T++ T P+++YY+ G + RINA
Sbjct: 130 FFDVAEETLVKRLLHR-AQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINA 188
Query: 367 EEEPDQVFDKVKVAFDEIKLK 305
E D +F V D+ K
Sbjct: 189 EGSVDDIFAVVVANLDKATSK 209
>AF304123-1|AAG50236.1| 210|Caenorhabditis elegans adenylate kinase
1 protein.
Length = 210
Score = 94.7 bits (225), Expect = 6e-20
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKS---GKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVL 548
+ +G +VP+EV L+ +AM K+ G + FLIDG+PR +E + + KL VL
Sbjct: 73 MESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQE-AKL--VL 129
Query: 547 FFECSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINA 368
FF+ + E +R L R A SGR+DDN +++KKR +T++ T P+++YY+ G + RINA
Sbjct: 130 FFDVAEETLVKRLLHR-AQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINA 188
Query: 367 EEEPDQVFDKVKVAFDEIKLK 305
E D +F V D+ K
Sbjct: 189 EGSVDDIFAVVVANLDKATSK 209
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/135 (23%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKER--FLIDGFPRNQDNMDGWERVMSDKTKLLFVLF 545
+ NG+ +P ++ ++L++ + G ++I+G+P++ D + E + +T L ++
Sbjct: 569 MNNGDPIPTKMCRTVLYEELHSRGTSNWGYVIEGYPKSPDQLVDLEHSLQ-RTDLAILI- 626
Query: 544 FECSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 365
+C+ + C E +R RSDD+ ++++ R + +T+P++ D G +R ++ +
Sbjct: 627 -DCTEQFCLEVINKRNRENK-RSDDDSDAVRSRMEYFKKNTLPMLKTLDDKGKLRVVDGD 684
Query: 364 EEPDQVFDKVKVAFD 320
+PD VF +V D
Sbjct: 685 ADPDTVFKEVVQVID 699
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Frame = -1
Query: 709 GEIVPVEVTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECS 533
GE++P ++ +LL M + F ++G+PR ++ +ER + L + + E
Sbjct: 231 GELIPNQLALTLLKAEMGRHPDAMGFFLEGYPREARQVEDFERQVKSVNMALILDYDE-- 288
Query: 532 REICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPD 353
E RRG G D I+ K++ T+P Y+D L+ I E++
Sbjct: 289 -RTLREHMERRGL-GMEIIDQKIKEFKQK-------TLPSAKYFDDQKLLHLIPGEKDDQ 339
Query: 352 QVFDKVK 332
+++K+K
Sbjct: 340 VIYEKMK 346
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/135 (23%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKER--FLIDGFPRNQDNMDGWERVMSDKTKLLFVLF 545
+ NG+ +P ++ ++L++ + G ++I+G+P++ D + E + +T L ++
Sbjct: 569 MNNGDPIPTKMCRTVLYEELHSRGTSNWGYVIEGYPKSPDQLVDLEHSLQ-RTDLAILI- 626
Query: 544 FECSREICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 365
+C+ + C E +R RSDD+ ++++ R + +T+P++ D G +R ++ +
Sbjct: 627 -DCTEQFCLEVINKRNRENK-RSDDDSDAVRSRMEYFKKNTLPMLKTLDDKGKLRVVDGD 684
Query: 364 EEPDQVFDKVKVAFD 320
+PD VF +V D
Sbjct: 685 ADPDTVFKEVVQVID 699
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Frame = -1
Query: 709 GEIVPVEVTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECS 533
GE++P ++ +LL M + F ++G+PR ++ +ER + L + + E
Sbjct: 231 GELIPNQLALTLLKAEMGRHPDAMGFFLEGYPREARQVEDFERQVKSVNMALILDYDE-- 288
Query: 532 REICTERCLRRGAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPD 353
E RRG G D I+ K++ T+P Y+D L+ I E++
Sbjct: 289 -RTLREHMERRGL-GMEIIDQKIKEFKQK-------TLPSAKYFDDQKLLHLIPGEKDDQ 339
Query: 352 QVFDKVK 332
+++K+K
Sbjct: 340 VIYEKMK 346
>L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical
protein C29E4.8 protein.
Length = 251
Score = 44.8 bits (101), Expect = 6e-05
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Frame = -1
Query: 709 GEIVPVEVTCSLLHKAMQKSG-KERFLIDGFPRNQDNMDGWERVMS-DKTKLLFVLFFEC 536
G++V EV C L+ + ++K K F++DGFPR + + ++ KT L V+ F
Sbjct: 82 GKLVSDEVVCKLIEQKLEKPECKYGFILDGFPRTSGQAEKLDEILERRKTPLDTVVEFNI 141
Query: 535 SREICTERCL-RRGAAGSGR-------------------------SDDNIESLKKRFNTY 434
+ ++ R R SGR SDDN E+L+KR Y
Sbjct: 142 ADDLLVRRITGRLFHIASGRSYHLEFKPPKVPMKDDLTGEPLIRRSDDNEETLRKRLVQY 201
Query: 433 LNDTMPIINYYDKLGLVRRINAEEEPDQV---FDKVKVAFDEIK 311
T+P+++YY K G+ ++A + V D+V F + K
Sbjct: 202 HQMTVPLVDYYKKHGVHVAVDAAKPMTDVKAHIDQVFAKFTQKK 245
>U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical
protein W03A5.1 protein.
Length = 832
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Frame = -1
Query: 673 LHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKL-LFVLFFECSREI-CTERCLRR 500
L + S +E+ L+ + +NQ WE + +T + + LF+ ++I C + +
Sbjct: 472 LKNRLNLSKEEKELVSSYMKNQGPQKKWENMPLHETSIRINSLFYVDGKKIDCGTDQIGK 531
Query: 499 GAAGSGRSDDNIESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVKV 329
GA G+ + K +F L +++P+ KLGL R ++++E + F ++++
Sbjct: 532 GAFGTVK--------KGKFRNSLGESVPVA--VKKLGL--RESSKDERNPAFSEMEI 576
>Z48585-2|CAA88479.1| 222|Caenorhabditis elegans Hypothetical
protein ZK673.2 protein.
Length = 222
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = -1
Query: 718 IRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFE 539
+ GE VP + + M K+G R ++DG+PRN + +++ ++ L ++ +
Sbjct: 57 LNKGEHVPDSILNGAILAEMLKAGP-RVVLDGYPRNMSQL----KMVEEQAPLNLIVELK 111
Query: 538 CSREICTER 512
R++ +R
Sbjct: 112 VPRKVLIDR 120
>AF016673-3|AAB66122.2| 366|Caenorhabditis elegans Hypothetical
protein T06D4.2 protein.
Length = 366
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 435 YVLNLFFKLSMLSSLR-PLPAAPRLKHLSVHISREHSKNKTKSSLV 569
+VLNL L++L LR P RLK V+ISR+ SK+K +++
Sbjct: 314 FVLNLE-PLALLGELRVPQVGQDRLKSAMVNISRQISKHKDLIAMI 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,443
Number of Sequences: 27780
Number of extensions: 310442
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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