Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p16
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870...    30   1.8  
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    29   4.2  
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    29   5.6  
07_01_0003 + 16711-17016,17107-17177,17269-17461,17929-17984,185...    28   9.7  
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612...    28   9.7  

>03_02_0467 +
           8707777-8707892,8708030-8708096,8708190-8708260,
           8708629-8708746,8708820-8708893,8709278-8709333,
           8709448-8709531,8709611-8709698,8709786-8709863,
           8710335-8710391,8710606-8711044
          Length = 415

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 299 IDAYKNRWTEYMSRRRSLVDNMATVTTH 382
           I  YKNR+  ++   R + D M  VTTH
Sbjct: 41  ISGYKNRFQNFIKHLREMGDEMLVVTTH 68


>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 128 MNRSIVTLRANDDCTNRKTGTRDNKCPLLDRHRE 27
           +N++ V    N  C N+KTG +  + P +D+++E
Sbjct: 729 LNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKYKE 762


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 452 LQICVNFFFFI--ALVGRRAYGPPYGEWLPSP 363
           LQ+C  FF F   A + R    P YG W+P P
Sbjct: 608 LQLCYGFFGFAVAANLTRDLCPPKYGRWVPLP 639


>07_01_0003 +
           16711-17016,17107-17177,17269-17461,17929-17984,
           18511-18588,18873-18929,19396-19903
          Length = 422

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 299 IDAYKNRWTEYMSRRRSLVDNMATVTTHHKV 391
           +  YKNR+  ++   R + D +  +TTH  V
Sbjct: 82  VSGYKNRFLNFIKYLREMGDEVIVITTHEGV 112


>03_05_0435 -
           24259864-24260206,24260302-24260467,24261175-24261241,
           24261553-24261648,24261718-24261898,24262252-24262323,
           24262393-24262505,24262596-24262817,24263262-24263910,
           24264118-24264206,24265932-24266015,24266219-24266358,
           24266522-24266573
          Length = 757

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 530 IWRLHYTCYHVTFSSSKRRKVFATRPRTCIYGR*VTSYRTSDNLHPYSR 676
           IW +  T    T  S   R+ FA  P  C      +S RTS +LH  +R
Sbjct: 625 IWGVRSTENLFTTPSMDSRRAFALFPSECPKSSLTSSTRTSSHLHSPTR 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,877,146
Number of Sequences: 37544
Number of extensions: 474213
Number of successful extensions: 961
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)