Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p16
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   7.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 136 TIERLEHLDLKTDLDEKTCCFLCLSQ 213
           +++R++H +L     +K CC   LS+
Sbjct: 382 SVDRMQHCELHMQPRKKNCCRSWLSK 407


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 136 TIERLEHLDLKTDLDEKTCCFLCLSQ 213
           +++R++H +L     +K CC   LS+
Sbjct: 382 SVDRMQHCELHMQPRKKNCCRSWLSK 407


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 530 IWRLHYTCYHVTFSSSKRRKV 592
           +  +HY  YH+T   +K++KV
Sbjct: 3   VLHIHYQHYHITPVFTKQKKV 23


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 416 LVGRRAYGPPYGEWLPSPYC 357
           L+G R   PP  +W P   C
Sbjct: 408 LIGSRRTSPPPEDWKPLDKC 427


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = -2

Query: 409 ADEHTAHLMVSGYRRHIVH 353
           +++ T H++ +G+R+ +VH
Sbjct: 61  SNKKTRHMLPTGFRKVLVH 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,981
Number of Sequences: 438
Number of extensions: 6118
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)