Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p12
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...    30   2.4  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    28   7.2  
03_05_1036 + 29875585-29875648,29875742-29875956                       28   7.2  
02_01_0412 - 3005600-3007759                                           28   7.2  
12_01_0398 - 3143745-3143777,3144045-3144126,3144863-3144975,314...    28   9.5  

>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 630 SWDELLEDGTRRFEMRC 680
           SWD+ L+ G RRFE +C
Sbjct: 206 SWDDALQSGARRFEHKC 222


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 102  KYNDTLDDRMDYIESVMRRRHYVPIEALPTIR 197
            K NDTL D +  + S +   +Y+PI  LP ++
Sbjct: 935  KINDTLPDLVKLVFSDINGCNYIPISQLPNLK 966


>03_05_1036 + 29875585-29875648,29875742-29875956
          Length = 92

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 169 CRLKRCPQSGLIPISARWPATRLNACRCLC 258
           C   RC Q G I     +P  +L+ C CLC
Sbjct: 40  CSTVRCIQGGYITCK-NYPGKKLDGCVCLC 68


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -3

Query: 448 LIKMTLVSRLQLRGKLLVEQYPPTVSLWPLTTNTSVLLTKKY-AADGLSHT*LQSNIGRS 272
           L ++T +SRL L   LL +  P  +    ++T++ V+L   +   DG  H    S+  R 
Sbjct: 100 LSELTSLSRLNLSYNLLSDGLPSEL----ISTSSIVVLDVSFNRLDGELHELNSSSPDRP 155

Query: 271 ISLTNKGTDMHLIVSPANVPRLVSNLIVGNAS 176
           + + N  +++     P+     +SNL   NAS
Sbjct: 156 LQVLNISSNLFTGAFPSTTWEKMSNLFAINAS 187


>12_01_0398 -
           3143745-3143777,3144045-3144126,3144863-3144975,
           3145072-3145152,3145517-3145569,3146042-3146150,
           3147512-3147571,3147689-3147771,3147913-3148086,
           3148133-3148172
          Length = 275

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -2

Query: 434 ARFAITIAGQTISGAVSAHRQFVAVDHKHVRVVDKEIRRRRVIAYLTTIKHRQVNFTNKQ 255
           A   + ++ + I G +   + F   D KH   +DKE  R  V+ + + +K+  + + +  
Sbjct: 183 AESGMNLSDEIIEGIID--KTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLPYLSNS 240

Query: 254 RHR 246
           R+R
Sbjct: 241 RYR 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,714,043
Number of Sequences: 37544
Number of extensions: 478055
Number of successful extensions: 1115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)