Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p12
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69663-1|CAA93511.1|  636|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical ...    31   0.70 
AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna...    29   3.7  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    29   3.7  
Z66519-7|CAA91378.2|  338|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    28   8.6  
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z69663-1|CAA93511.1|  636|Caenorhabditis elegans Hypothetical
           protein K02B9.1 protein.
          Length = 636

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 396 TNSLPRNCNRETSVILMSLNQWTCIAEDPRYYAGTDNMTQIAGRQHFDRIMPGQSNRNIL 575
           TN L  + N E S +  S N  T +A+DP   +    + Q     HFD I+  + NRN  
Sbjct: 58  TNMLNGSNNVENSWVCFSGN--TSLADDPNVLSNFSALAQ-QRVNHFDTIVQERDNRNAS 114

Query: 576 F--DRLLGREVNVATNTF 623
           F     +G  +N + + F
Sbjct: 115 FLNGSAVGNNLNTSFSVF 132


>U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical
           protein C50F7.9 protein.
          Length = 298

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 486 YYAGTDNMTQIAGRQHFDRIMPGQSNRNILFDRLLGREVNVATNTFRRSWDELLED 653
           +Y G+ ++  +  +  FD         NIL+DR  GR   +A   FR +W +LL D
Sbjct: 201 FYDGSQHIKALFTKSAFDEANLVSCQFNILYDRPKGR---LARREFRATWKKLLYD 253


>AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical
           protein ZK1025.7 protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 138 CNPSYRPTCHCIFVGHV*YVSMPDKRAGILYK 43
           C P Y P  HC +V H  Y  +PD   GI+ K
Sbjct: 104 CPPVYGPATHCFYVPHTFYGVLPDN--GIIEK 133


>AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform a protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 658 LDVSKCAATPEITTIISCLLTRLIPSSVSRTCALVFA 768
           L V KC   P+  T +       IP+SVS  CA + A
Sbjct: 278 LRVGKCVTPPDALTYLQPASVSAIPASVSVACAAITA 314


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 658 LDVSKCAATPEITTIISCLLTRLIPSSVSRTCALVFA 768
           L V KC   P+  T +       IP+SVS  CA + A
Sbjct: 278 LRVGKCVTPPDALTYLQPASVSAIPASVSVACAAITA 314


>Z66519-7|CAA91378.2|  338|Caenorhabditis elegans Hypothetical
           protein B0334.7 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 381 GGYCSTNSLPRNCNRETSVILMSLNQWTCIAE 476
           GGYC     PRN  R     L+ L+ WT + +
Sbjct: 36  GGYCIVKKTPRN-RRSARWYLLHLHAWTILTD 66


>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 415 LRGKLLVEQYPPTVSLWPLTTNTSVLLTKKYAAD 314
           LRG L V Q  P+  ++      S +LTKK A D
Sbjct: 727 LRGSLSVSQMEPSADIYSFAIIASEILTKKEAWD 760


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 415 LRGKLLVEQYPPTVSLWPLTTNTSVLLTKKYAAD 314
           LRG L V Q  P+  ++      S +LTKK A D
Sbjct: 727 LRGSLSVSQMEPSADIYSFAIIASEILTKKEAWD 760


>Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical
           protein R134.2 protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 415 LRGKLLVEQYPPTVSLWPLTTNTSVLLTKKYAAD 314
           LRG L V Q  P+  ++      S +LTKK A D
Sbjct: 728 LRGSLSVSQMEPSADIYSFAIIASEILTKKEAWD 761


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,480
Number of Sequences: 27780
Number of extensions: 408521
Number of successful extensions: 1138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)