Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14p12
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = -2

Query: 170 HVVPSTHYGFNVIHPIVQRVIVFLLGTFDM*VCLIKGLVYYI 45
           H++ +  Y +  ++P+   ++ F++G       +  G+V YI
Sbjct: 35  HLIDANWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYI 76


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 79  YISNVPNKNTMTRWTIGW 132
           ++++ PN + +T W +GW
Sbjct: 661 WLNHSPNYDQVTNWYMGW 678


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = -2

Query: 170 HVVPSTHYGFNVIHPIVQRVIVFLLGTFDM*VCLIKGLVYYI 45
           H++ +  Y +  ++P+   ++ F++G       +  G+V YI
Sbjct: 1   HLIDANWYQYPPLNPMWHGILGFVIGMLGFVSVMGNGMVVYI 42


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 709 CLLTRLIPSSVSRTCAL 759
           C +TR+IP   S  C L
Sbjct: 232 CTITRVIPQVCSGNCKL 248


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 709 CLLTRLIPSSVSRTCAL 759
           C +TR+IP   S  C L
Sbjct: 232 CTITRVIPQVCSGNCKL 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,276
Number of Sequences: 438
Number of extensions: 4859
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)